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Anopheles gambiae
cluster # 5719 cluster # 5719       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5719#0 length = 956 sequences # 3  
consensus_5719#1 length = 529 sequences # 1  

consensusID : consensus_5719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 956
fasta sequence
                              [CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT]

[+] EMBL BM598119             [CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAAT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX626511             [                                                                                                                                                                                                                                                                                                                                                                             TTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT]
[+] EMBL BX613954             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAAAAGAGAGGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACGATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTC                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_5719#0 CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCAT CTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGG CTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGA AGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAA ACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCC GAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCA GGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCG CCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAG AGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGAC AATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCG TCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTAC AGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGA GTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACG TGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTC GAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCC AGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT



consensusID : consensus_5719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence
                              [GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA]

[+] EMBL BX616564             [GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA]


>consensus_5719#1 GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGC CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG GCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCG TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATAT GGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAA CAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAA CATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCC AGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATG GAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5719#0      -----------------------------------------------CCGCGAGAGTGGC 13
consensus_5719#1      GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGC 60
                                                                     *  **********

consensus_5719#0      CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 73
consensus_5719#1      CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 120
                      ************************************************************

consensus_5719#0      GCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCG 133
consensus_5719#1      GCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCG 180
                      ***************************** ******************************

consensus_5719#0      TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGT 193
consensus_5719#1      TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGG---------- 230
                      **************************************************          

consensus_5719#0      TCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGAT 253
consensus_5719#1      ----------------------------------------------------GCGAAGAT 238
                                                                          ********

consensus_5719#0      ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 313
consensus_5719#1      ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 298
                      ************************************************************

consensus_5719#0      AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 373
consensus_5719#1      AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 358
                      ************************************************************

consensus_5719#0      AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 433
consensus_5719#1      AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 418
                      ************************************************************

consensus_5719#0      CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 493
consensus_5719#1      CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 478
                      ************************************************************

consensus_5719#0      TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGA 553
consensus_5719#1      TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA--------- 529
                      ***************************************************         

consensus_5719#0      CCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCA 613
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACC 673
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      AACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAA 733
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTC 793
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      CCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAA 853
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      ATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGG 913
consensus_5719#1      ------------------------------------------------------------
                                                                                  

consensus_5719#0      GNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT 956
consensus_5719#1      -------------------------------------------
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)