These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 956 fasta sequence [CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT] [+] EMBL BM598119 [CCGCGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGTTCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAAT ] [+] EMBL BX626511 [ TTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCAGATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACCAACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAACAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTCCCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAAATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGGGNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT] [+] EMBL BX613954 [ GGAAAAGAGAGGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACGATCGACCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTC ] consensusID : consensus_5719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA] [+] EMBL BX616564 [GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGCCCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAGGCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCGTACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGGCGAAGATATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCCAACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGAAACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCATCCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGATGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5719#0 -----------------------------------------------CCGCGAGAGTGGC 13 consensus_5719#1 GAAAAGATGTGCTCGTACGACTACGTCGAGGTGTACGGCGGACTGGACGACGAGAGTGGC 60 * ********** consensus_5719#0 CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 73 consensus_5719#1 CCCCTGCACGGAAAGTACTGTGGCAATGCGAATCCACCGGAAATCATCTCGATGCACGAG 120 ************************************************************ consensus_5719#0 GCGCTCATGGTGCGGTTCCGGTCGGACGACACGGTTGGATTCAAGGGCTTTTCGGCTGCG 133 consensus_5719#1 GCGCTCATGGTGCGGTTCCGGTCGGACGATACGGTTGGATTCAAGGGCTTTTCGGCTGCG 180 ***************************** ****************************** consensus_5719#0 TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGGTTCTGATAGT 193 consensus_5719#1 TACGTCGCCATCAAATCGAACGATGACGTGCTGACCACCGACGAAGAAGG---------- 230 ************************************************** consensus_5719#0 TCCGATATCATCCCGTTTCCCGGTTCACTAAAAACAGTGTTCATCAAACAGGGCGAAGAT 253 consensus_5719#1 ----------------------------------------------------GCGAAGAT 238 ******** consensus_5719#0 ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 313 consensus_5719#1 ATGGACGAGGAGGAGGAGGACGACGATATCGATTATGAGATCTACCCGAACCGACCGGCC 298 ************************************************************ consensus_5719#0 AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 373 consensus_5719#1 AACAGTAAGGTGCACGTCGCGGTGCACAACGAAATACGCTCATCTCAGGCGATTGACTGA 358 ************************************************************ consensus_5719#0 AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 433 consensus_5719#1 AACATAATCAAATACTTTGCCACGTAAGGTGGTGCAGTGCGCGCGCGCCATCGGTATCAT 418 ************************************************************ consensus_5719#0 CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 493 consensus_5719#1 CCAGGCCACCGATCCGCCCCAGCACACATGCACGCATCGAGAGGGAGAGGGGAAAAGAGA 478 ************************************************************ consensus_5719#0 TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATATACTATCGA 553 consensus_5719#1 TGGAGAGAGACGAGAGAGACCCTACGCGAGCTGCCAACTTCATGGACAATA--------- 529 *************************************************** consensus_5719#0 CCTAACCGCGACGCGCGTTGTTCCACCAGCCATACCAGCAGCCTCCGTCCACAATGAGCA 613 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GATTGTTAGAGAGGCCCCCTTGCTACAATGGGGTTCAAGTACAGTACAGACGCGAACACC 673 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 AACCGGTGTGGCCGGAAGTGCTAGTGGCAAGCATGTTCTGTACTTGAGTTCTTTCCAAAA 733 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CAGGTTCACTCATTGCTGGACATTAACTACATTCGTCACAATGGACGTGCTCATGTCTTC 793 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 CCCGTGTGTGGCGTAGGGGATTATTAGCCAAACAAAACGACCGTTTCGAGGGAGCGTGAA 853 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 ATGGGAAAGAAGCTCCCCAAATGTAGATAGAACACNAACACTCATCCAGAGTAGGAGAGG 913 consensus_5719#1 ------------------------------------------------------------ consensus_5719#0 GNGCTGGTTANGAAGGTATAAAGAATCTCGTAANGAACACAAT 956 consensus_5719#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||