These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 908 fasta sequence [CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGA-AAAACGAGCAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAGGTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAGGAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTGCAGCTCGACGGCCGCACGCTGG] [+] EMBL BM599425 [CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGA AAAACGAGC ] [+] EMBL BM598881 [ CCG CGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCT GGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAGGTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAGGAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTGCAGCTCGACGGCCGCACGCTGG] consensusID : consensus_5723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG] [+] EMBL BM656045 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAA ] [+] EMBL BM623700 [ CCG AGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5723#0 CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAAT 60 consensus_5723#1 ------CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAAT 54 * * ** * * * * *** *********************** consensus_5723#0 TCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTT 120 consensus_5723#1 TCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTT 114 ************************************************************ consensus_5723#0 CCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGC 180 consensus_5723#1 CCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGC 174 ************************** ******************************** consensus_5723#0 CGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTG--------------TGTGTGTGTGTA 226 consensus_5723#1 CGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTA 234 ****************************** *** ************ consensus_5723#0 CAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTC 286 consensus_5723#1 CAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTC 294 *********************************************** ************ consensus_5723#0 GCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAA 346 consensus_5723#1 GCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAA 354 ************************************************************ consensus_5723#0 CCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGT 406 consensus_5723#1 CCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGT 414 ************************************************************ consensus_5723#0 GTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGC 466 consensus_5723#1 GTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGC 474 ************************************************************ consensus_5723#0 GGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCG 526 consensus_5723#1 GGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCG 534 ******************** *************************************** consensus_5723#0 GTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAG 586 consensus_5723#1 GTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAG 594 ************************************************************ consensus_5723#0 AACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAAC 646 consensus_5723#1 AACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAAC 654 ************************************************************ consensus_5723#0 GAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGAAAAACGAGCAGCAGCAG 706 consensus_5723#1 GAGTCCGCGGACGATAAAAGCGCTGG-CGTTGCCGGTGGCGGAGAGACCG--AGCAGCAG 711 ************************** **************** * ** ******** consensus_5723#0 CAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAG 766 consensus_5723#1 CAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG------------------ 753 ****************************************** consensus_5723#0 GTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAG 826 consensus_5723#1 ------------------------------------------------------------ consensus_5723#0 GAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTG 886 consensus_5723#1 ------------------------------------------------------------ consensus_5723#0 CAGCTCGACGGCCGCACGCTGG 908 consensus_5723#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||