cluster # 5723

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Anopheles gambiae
cluster # 5723 cluster # 5723 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5723#0 length = 908 sequences # 2

consensus_5723#1 length = 753 sequences # 2

consensusID : consensus_5723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 908
fasta sequence

                              [CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGA-AAAACGAGCAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAGGTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAGGAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTGCAGCTCGACGGCCGCACGCTGG]

[+] EMBL BM599425             [CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGA AAAACGAGC                                                                                                                                                                                                                  ]
[+] EMBL BM598881             [                                                                                                                                                                                                                                                                                         CCG CGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCT GGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAGGTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAGGAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTGCAGCTCGACGGCCGCACGCTGG]




>consensus_5723#0
CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAAT
TCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTT
CCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGC
CGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTGTGTGTGTGTGTACAGTGCATGGAAAT
TACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTCGCACCGTGTGGAAG
CAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTC
TGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGG
AGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGG
TATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGC
GGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGG
ACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGA
TAAAAGCGCTGGGCGTTGCCGGTGGCGGAAAAACGAGCAGCAGCAGCAGCAGCAGCAGGA
GGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAGGTGCTGTCGCCGGG
CGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAGGAGATCCACCAGCT
GCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTGCAGCTCGACGGCCG
CACGCTGG

consensusID : consensus_5723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 753
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG]

[+] EMBL BM656045             [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAATTCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAA                                                                                ]
[+] EMBL BM623700             [                                                           CCG AGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCCGCGGACGATAAAAGCGCTGGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG]




>consensus_5723#1
CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAATTCAGGC
CGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTTCCGGGT
GCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGCCGCGCG
CGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTACAGTGC
ATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTCGCACCG
TGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAACCGCCA
GTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGTGTTCAA
TCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGCGGCAAA
AAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCGGTGGTG
GCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAGAACGGG
CTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAACGAGTCC
GCGGACGATAAAAGCGCTGGCGTTGCCGGTGGCGGAGAGACCGAGCAGCAGCAGCAGCAG
CAGGAGGACGACGTGATGAGGCTGATGCAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5723#0      CCGGTGCATTCTGGTGGTGTGTGAGTGTGCCTTGGCAATTTCGGAGAGCGGACGGAAAAT 60
consensus_5723#1      ------CCGCCCACGCGTCCGCCCACGCGTCCGGGCGATTTCGGAGAGCGGACGGAAAAT 54
                            *   *     **  *     * * *  *** ***********************

consensus_5723#0      TCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTT 120
consensus_5723#1      TCAGGCCGAAGAAAACAGCCGGACTGGTGCTTGGCTGGTGCAAATAGGGCGACAGGACTT 114
                      ************************************************************

consensus_5723#0      CCGGGTGCTTTTCACACTTACCTCCCTTCCCTCGCACAGGAAGCAGTGTCCTTGCCTTGC 180
consensus_5723#1      CCGGGTGCTTTTCACACTTACCTCCCCACCCTCGCACAGGAAGCAGTGTCCTTGCCTTGC 174
                      **************************  ********************************

consensus_5723#0      CGCGCGCGCTCTCGTGTTCGTGTGTGCGTGTGTG--------------TGTGTGTGTGTA 226
consensus_5723#1      CGCGCGCGCTCTCGTGTTCGTGTGTGCGTGCGTGCGTGTGTGTGTATGTGTGTGTGTGTA 234
                      ****************************** ***              ************

consensus_5723#0      CAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCCAATCGTGCCGTC 286
consensus_5723#1      CAGTGCATGGAAATTACAGAGACCGTGAAGAAGGAAGAAGTTTCGTCTAATCGTGCCGTC 294
                      *********************************************** ************

consensus_5723#0      GCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAA 346
consensus_5723#1      GCACCGTGTGGAAGCAGCGTGTGACTTTCGACCGAAACGTGCGTGTGTAGAACCAGGAAA 354
                      ************************************************************

consensus_5723#0      CCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGT 406
consensus_5723#1      CCGCCAGTGTTGTCTGCCTAAAGGAGCGGGTTGTGAAATATGGCACTGGAAACGGAAAGT 414
                      ************************************************************

consensus_5723#0      GTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGC 466
consensus_5723#1      GTTCAATCGGCCGGAGCCGCAACGGAGGCGCTGTCCACCGCTGGTTCCGGGGAGGCGGGC 474
                      ************************************************************

consensus_5723#0      GGCAAAAAGAAAGGTATGGCGAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCG 526
consensus_5723#1      GGCAAAAAGAAAGGTATGGCCAAGAACAAAAAACAGAATGGAAAAGCAAAAACTCCCCCG 534
                      ******************** ***************************************

consensus_5723#0      GTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAG 586
consensus_5723#1      GTGGTGGCAGCGGCGGCCGGTGAGCAAAAGGAAACGATCGGCAACGGACACGCGGAACAG 594
                      ************************************************************

consensus_5723#0      AACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAAC 646
consensus_5723#1      AACGGGCTGAACGGACACGCGAGCTCGGAAGAGTCGGACCCGGCCGCTGCTGGCCCGAAC 654
                      ************************************************************

consensus_5723#0      GAGTCCGCGGACGATAAAAGCGCTGGGCGTTGCCGGTGGCGGAAAAACGAGCAGCAGCAG 706
consensus_5723#1      GAGTCCGCGGACGATAAAAGCGCTGG-CGTTGCCGGTGGCGGAGAGACCG--AGCAGCAG 711
                      ************************** **************** * **    ********

consensus_5723#0      CAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAGACCGGCTTTACGGTGCAG 766
consensus_5723#1      CAGCAGCAGCAGGAGGACGACGTGATGAGGCTGATGCAGGAG------------------ 753
                      ******************************************                  

consensus_5723#0      GTGCTGTCGCCGGGCGTGGAGCCGCTCTCGATACAGGTGTCGAGCATGGAGCTGGTGCAG 826
consensus_5723#1      ------------------------------------------------------------
                                                                                  

consensus_5723#0      GAGATCCACCAGCTGCTGATGGACCGGGAGGACACGTGCCACCGGACGTGCTTCTCGCTG 886
consensus_5723#1      ------------------------------------------------------------
                                                                                  

consensus_5723#0      CAGCTCGACGGCCGCACGCTGG 908
consensus_5723#1      ----------------------