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Anopheles gambiae
cluster # 5725 cluster # 5725       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5725#0 length = 838 sequences # 2  
consensus_5725#1 length = 599 sequences # 1  
consensus_5725#2 length = 561 sequences # 1  

consensusID : consensus_5725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 838
fasta sequence
                              [CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGATTGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGTCACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCTG]

[+] EMBL BM638184             [CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGATTGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGTCACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATAT                                                                                                                                                                                    ]
[+] EMBL BM599191             [                                                                                                                                                      CCGGCGCGAAACGCAGGACAAGGTGACGTCGGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGTGTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCATCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCTG]


>consensus_5725#0 CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGAT TGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGT CACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTC GGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGT GTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGTTCCTGATGTACTTCTTCCTCAT CAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCACG CCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGT CGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGA AATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAG CGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAG CGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATATCT GAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAG CGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCA CGGGGTGCTCATCTTCTTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCTG



consensusID : consensus_5725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [CCGCCATCCTGTCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGTGTCGTTCGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGTCTGTTTTCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTT]

[+] EMBL BM603197             [CCGCCATCCTGTCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGTGTCGTTCGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGTCTGTTTTCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTT]


>consensus_5725#1 CCGCCATCCTGTCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGA TCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGT TAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCT GGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGTGTCGTTCGTTGCCTCCATTC AGAAGCCTCCTTCATATTGACTCGCTCTCTGTCTGTTTTCCTTTCCCTGCTTTCCTTCCA GCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAAC ATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCG GATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCC GGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAG TCCTGGTTTTGGATCATCGTCGACGCGGTCAACTGTCTGCACGGGGTGCTCATCTTCTT



consensusID : consensus_5725#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence
                              [TCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTCTGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT]

[+] EMBL BX619235             [TCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGATCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTCTGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT]


>consensus_5725#2 TCATCCCACGGTCCCGTGCGTGGGATTTCCAGTGCACGCCGGTGGAAGATCCGAGAGCGA TCCTGGTATATCCTGAACCACATCTACGCCATCACCGTCGCAGTGACGTTAACGACCATG GTTTACATTTATCACAGCCGGTATCCGACGCTGGGTGAAATCTCCTGCTGGTTCCGAACC GAGCGGGAACAGTCGTACTTCGTCTACCTACCGCTGAGCGTGATGCTGAGCATAAACATT TTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGCGAGCGGGGACGACCTTAGCCCGGAT CGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTATCTGAAGCTGTTCCTGCTGTCCGGG CTGATCTGGGTGTTCGAGATCCTGTCGTTCCACATGAGCGAAGGTCTGGTGCCCCAGTCC TGGGTTTTGGATCATCGTCGACGCNGTCAACTGTCTGCACNNGGTGCTCATCTNNCTTCG TGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAGCNGGGCCAACCGGTNGGTGTTCTGC TTCCGGGGCGCCGGCACCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5725#0      CCGCGAGAGCACGCAGCCGGTGTTTATCGTGTGCTTCAACATGGCCAACATGGACACGAT 60
consensus_5725#2      ------------------------------------------------------------
consensus_5725#1      ------------------------------------------------------------
                                                                                  

consensus_5725#0      TGCGACGATGCTCATCAGCAAGGGCATCATGATGCTGATCTCCGTGTTCTTCCTGCTCGT 120
consensus_5725#2      ------------------------------------------------------------
consensus_5725#1      ------------------------------------------------------------
                                                                                  

consensus_5725#0      CACGCTCTACATCTACTACATCATACCGGACCTGCGCGAAACGCAGGACAAGGTGACGTC 180
consensus_5725#2      ------------------------------------------------------------
consensus_5725#1      ------------------------------------------------------------
                                                                                  

consensus_5725#0      GGCAGCCGTCGGCAGCCTGGCCGTATTCATGTTCCTGCTCAGCCTGGTCCAGCTGTGGGT 240
consensus_5725#2      ------------------------------------------------------------
consensus_5725#1      ---------CCGCCATCCTGTCAT-CCCACGGTCCCGTGCG--TGGGATTTCCAGTGCAC 48
                                                                                  

consensus_5725#0      GTCACTAACGCACACGCCCTTCTGCACCGTCATCGCGT-TCCTGATGTACTTCTTCCTCA 299
consensus_5725#2      ------------------------------------------------------------
consensus_5725#1      GCCGGTGGAAGATCCGA------GAGCGATCCTGGTATATCCTGAACCACATCTACGCCA 102
                                                                                  

consensus_5725#0      TCAGCTACTTCGCATGGTTGAACATGGTGATGGCGAACGTATGGAAATTGACAGTTGCAC 359
consensus_5725#2      ---------------------TCATCCCACGGTCCCGTGCGTGGGATTT--CCAGTGCAC 37
consensus_5725#1      TCACCGTCGCAGTGACGTTAACGACCATGGT-TTACATTTATCACAGCCGGTATCCG-AC 160
                                             *                 *   *          * **

consensus_5725#0      GCCGGTGGAAGATCCGAGAGCGATCCTG-GTATATCCTGAACCACATCTACGCCATCACC 418
consensus_5725#2      GCCGGTGGAAGATCCGAGAGCGATCCTG-GTATATCCTGAACCACATCTACGCCATCACC 96
consensus_5725#1      GCTGGGTGAAATCTCCTGCTGGTTCCGAAGTGAGTTTTTGTCCTTCTAATAGAATTGAGT 220
                      ** **  ***    *  *   * ***   **   *  *   **   *    *   * *  

consensus_5725#0      GTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGT 478
consensus_5725#2      GTCGCAGTGACGTTAACGACCATGGTTTACATTTATCACAGCCGGTATCCGACGCTGGGT 156
consensus_5725#1      GTCGTT-CGTTGCCTCCATTCAGAAGCCTCCTTCATATTGACTCGCTCTCTGT-CTGTTT 278
                      ****    *  *    *   **       * ** **     *  *    *    ***  *

consensus_5725#0      GAAATCTCCTGCTGGT-TCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 537
consensus_5725#2      GAAATCTCCTGCTGGT-TCCGAACCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 215
consensus_5725#1      TCCTTTCCCTGCTTTCCTTCCAGCCGAGCGGGAACAGTCGTACTTCGTCTACCTACCGCT 338
                          *  ******    * * * *************************************

consensus_5725#0      GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 597
consensus_5725#2      GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 275
consensus_5725#1      GAGCGTGATGCTGAGCATAAACATTTTCCTGTTCGTCTGGACGAGCCTGCATCTGCATGC 398
                      ************************************************************

consensus_5725#0      GAGCGGGGACGACCTTAGCCCAGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTATA 657
consensus_5725#2      GAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTA 335
consensus_5725#1      GAGCGGGGACGACCTTAGCCCGGATCGAAAAAAGTCACTCCGGTACAAGTGCATGCTGTA 458
                      ********************* *********************************** **

consensus_5725#0      TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 717
consensus_5725#2      TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 395
consensus_5725#1      TCTGAAGCTGTTCCTGCTGTCCGGGCTGATCTGGGTGTTCGAGATCCTGTCGTTCCACAT 518
                      ************************************************************

consensus_5725#0      GAGCGAAGGTCTGGTGCCCCAGTCCTGG-TTTTGGATCATCGTCGACGCGGTCAACTGTC 776
consensus_5725#2      GAGCGAAGGTCTGGTGCCCCAGTCCTGGGTTTTGGATCATCGTCGACGCNGTCAACTGTC 455
consensus_5725#1      GAGCGAAGGTCTGGTGCCCCAGTCCTGG-TTTTGGATCATCGTCGACGCGGTCAACTGTC 577
                      **************************** ******************** **********

consensus_5725#0      TGCACGGGGTGCTCATCTTC-TTCGTTCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAG 835
consensus_5725#2      TGCACNNGGTGCTCATCTNNCTTCGTGCTGATCGTCTGGCGGCAGCGCATCAAGCGCGAG 515
consensus_5725#1      TGCACGGGGTGCTCATCTTCTT-------------------------------------- 599
                      *****  ***********   *                                      

consensus_5725#0      CTG------------------------------------------- 838
consensus_5725#2      CNGGGCCAACCGGTNGGTGTTCTGCTTCCGGGGCGCCGGCACCGCT 561
consensus_5725#1      ----------------------------------------------
                                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)