These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAACTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCAGGGGGCATTATTCAGGAACAAGGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGCAAGGTAAGGAAGGAGAACAGCGCGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAAT] [+] EMBL BX614212 [CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAACTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCAGGGGGCATTATTCAGGAACAAGGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGCAAGGTAAGGAAGGAGAACAGCGCGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAAT] consensusID : consensus_5726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAGAGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACGCCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCCATACGCAAGAGACACATATCGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCCTATGCCGGTTTGCTTTTCGTTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGTTGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGTTATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGGAGGAGGAGGAGTANGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTCCACAAGTGAGCACGGTCGAC] [+] EMBL BX620479 [AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAGAGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACGCCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCCATACGCAAGAGACACATATCGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCCTATGCCGGTTTGCTTTTCGTTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGTTGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGTTATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGGAGGAGGAGGAGTANGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCCCCTCCACAAGTGAGCACGGTCGAC] consensusID : consensus_5726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAAACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAGGCATGTGC] [-] EMBL BX466640 [TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGGCAAGCACATCCAGAGACAGCCAAGTTATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCATCGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCATAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATACATAAAGATACATAACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGATGATGAACCAGGAAAAAAGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTTGTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAAACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAGGCATGTGC] consensusID : consensus_5726#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CCGGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCTTTGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGCTGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCC] [+] EMBL BM599360 [CCGGGGGCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCATCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGATCAATCTCATTTTTCTTTGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGCTGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACGGCACGGACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAAAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5726#1 ------------------------------------------------------------ consensus_5726#3 ------------------------------------------------------------ consensus_5726#0 CTGTGTACGGCACGAAATGATTGTGATGTTATGCTCTAAGTTTTATAGTGCGTACGAAAG 60 consensus_5726#2 ------------------------------------------------------------ consensus_5726#1 --------------------AAACAGCAGCCGAAGAAGAAGAAGAACAGCCAATGATGAG 40 consensus_5726#3 ------------------------------------------------------------ consensus_5726#0 ACACGACAGGCAAGCCAAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAGGAGGA 120 consensus_5726#2 ------------------------------------------------------------ consensus_5726#1 AGTAATGTGAAGCCGAACCGAAAACGATTTTGTTTTAGCGTGGATTTACGAGGATATACG 100 consensus_5726#3 ------------------------------------------------------------ consensus_5726#0 AAGCTAAATCAATGGACCACAAAGTGTACCGGGCGAAGCGCAAAATCAATCAGCCATTCT 180 consensus_5726#2 ------------------------------------------------------------ consensus_5726#1 CCTTTACCATCGTTTCCCCGCCTCCCTATTTTTGCTTTACCCCGTGCGTTTACGCACCCC 160 consensus_5726#3 ------------------------------------------------------------ consensus_5726#0 GCCCCTGCAAAAGTGAGTACGATCAACTCCGGGTCCGGGCGTTATACGATAGACACAAAA 240 consensus_5726#2 ------------------------------------------------------------ consensus_5726#1 ATACGCAAGAGACACATATCGGG-GCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCA 219 consensus_5726#3 -----------------CCGGGG-GCGGGCTTGCGCAAGCACACGTGGGGCGCGCGCGCA 42 consensus_5726#0 CTCTTCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGG---CAAGCACA 297 consensus_5726#2 ----TCCACAAATCCATATGGCGCGCAGGAAGCAGGAAGCAGGAACGGG---CAAGCACA 53 * * ** ** * ***** *** * ** ** consensus_5726#1 TCGCGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGAT-CAATCTCATTTTTCCT 278 consensus_5726#3 TCGAGATGAACGCACGTGTCCGTTTTGTTGGGTTGTAATTGAT-CAATCTCATTTTTCTT 101 consensus_5726#0 TCCAGAGACAGCCAAGT-TATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCAT 356 consensus_5726#2 TCCAGAGACAGCCAAGT-TATACGTATTTAGAAAGCAACCGGTGCTACTACCACTAGCAT 112 ** ** * ** ** * * ** * * ** * * * * * * * * consensus_5726#1 ATGCCGGTTTGCTTTTCG----TTTTTTTATTGTGACTTTATTTTGGCTTTTTAAAAAGT 334 consensus_5726#3 -TGCCGTTTTGCTATCCGGTTTTTTTTTTATTTTTACTTTCTTTTGGCTTTTTAAAACGC 160 consensus_5726#0 CGGCCAGCTTCTTC-AGGGGGCATTATTCAGGAACAAG-GAGAGAAGATAGCAACAGCA- 413 consensus_5726#2 CGGCCAGCTTCTTCCAGGGGGCATTATTCAGGAACAAGAGAGAGAAGATAGCAACAGCA- 171 *** ** * * ** ** * * * * * * consensus_5726#1 TGGTTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACG-GCACGG 393 consensus_5726#3 TGATTTTCCTTCGATTAGAAGATCTTTTCTTTTTTTAATTACATCCATCCACG-GCACGG 219 consensus_5726#0 TAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATAC 473 consensus_5726#2 TAGCAATAGATCATCTAGGGTATGTACAGTTACAACAACAAAAAAGCTCTATATATATAC 231 * * ** *** ** * ** ** * * ** * * consensus_5726#1 ACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGTACGGCACGAAATGATTGTGATGT 453 consensus_5726#3 ACAAAAGTGCATGAAGAAACACTAACGGCTTCTGTGCACGGCACGAAATGATTGTGATGT 279 consensus_5726#0 ATAAAGATACAT-AACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGAT 532 consensus_5726#2 ATAAAGATACAT-AACATATACGTATAGGAAACGTGCGGAGACGTGGAAAAGTGGAAGAT 290 * *** * *** ** * * ** * * *** * * * ** * * consensus_5726#1 TATGGTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGAGG 513 consensus_5726#3 TATGCTCTAAGTTTTATAGTGCGTACGAAAGACACGACAGGCAAGCCAAGGAGGAGGA-- 337 consensus_5726#0 GATGAACCAGGAAAAA-AGGCTTTAGCA---AGGTAAGGAAGGAGAACAGCG-----CGT 583 consensus_5726#2 GATGAACCAGGAAAAA-AGGCTTTAGTAGAGAGATAACGGAATAACACAACAAAACCCTT 349 *** * * * * ** ** * * * * * consensus_5726#1 AGGAGGAGGAGTANGAGGAGGAAAGCTAA-ATCAATGGACCACAAAGTGTACCGGGCGAA 572 consensus_5726#3 ----------------------AAGCTAA-ATCAATGGACCACAAAGTGTACCGGGCGAA 374 consensus_5726#0 AGAGAGATAACGGAA--TAACACAACAAA-ACCCTTGTGCT-AAT--------------- 624 consensus_5726#2 GTGCTAATAACGAAAATTTGAACAACAAATGCAGTTACATTTGATTCTATACACAAATAA 409 * * ** * * consensus_5726#1 GCGCAAAATCAATCAGCC----ATTCTGCCCCTCCACAAGTGAGCACGGTCGAC------ 622 consensus_5726#3 GCGCAAAATCAATCAGCC----ATTCTGCC------------------------------ 400 consensus_5726#0 ------------------------------------------------------------ consensus_5726#2 ACGAAAGGAAAATTATTCTTGAATTATTCTGCAACGTGAAAAAATACAAACAAAAGGCAG 469 consensus_5726#1 -------- consensus_5726#3 -------- consensus_5726#0 -------- consensus_5726#2 GCATGTGC 477 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||