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Anopheles gambiae
cluster # 5737 cluster # 5737       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5737#0 length = 1655 sequences # 3  
consensus_5737#1 length = 533 sequences # 1  

consensusID : consensus_5737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1655
fasta sequence
                              [GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA-TAAGGTATTGTAGAACAA-TTTTCTCTTA-GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC]

[+] EMBL BX468105             [GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTTTCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCAAAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGATTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTTTCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGTGTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCAGCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAAAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGACTAAGGTATTGTAGAACAA TTTTCTCTTAGGCTTACTCACATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX628528             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCTAGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGA TAAGGTATTGTAGAACAATTTTTCTCTTA GCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATAGTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM601526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgTGGCAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACATTTCTTCAACGTGTGGCTGTCGAATGCTGATTACAAACTTAACAAGACATAGATGTACCAAGGTGCAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC]


>consensus_5737#0 GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAA CAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTT TCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCA AAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGA TTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTT TCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGT GTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCA GCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAA AAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCT AGGAGAGAAAATTCAAAAAATCGTACTGAAGTTATATTGATAAGGTATTGTAGAACAATT TTCTCTTAGCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCACAC TTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGGGT CTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAAAA CACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCTTT ATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAACTG TTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAATA GTTAATTGAAGCGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACAAAAAT GGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGATATGC CATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAAACACA TTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATGTACCA AGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACACAGAA CACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAATTACA AAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATATGAAAC AAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGAGAAAG AAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATATACAT ATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCGAACGA AGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATAACAAC ACACAAAAGATTGACTGTGACTGACCGTTGGTAGC



consensusID : consensus_5737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA]

[+] EMBL BM602709             [CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGAAGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGTTAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAACACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGTGTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTAGAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA]


>consensus_5737#1 CCGGTGAAAGACGAAGCGATCAGGAGTAGGGCGTTAGGAAAATTTTGGAACCCGCGCGGA AGGGTGCGTTATTGCGCCCGCCCCGGCTCCTGTGCAACTGAATAGTCTGATTTCTTTAGT TAATATAGCCTGTCCGAATAGAGAATGAGAGAAACCTTTTTTTTTTTTTTGGTACGAAAC AGAAGTAAACGCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCACCAAAA CACGAACAGAACAGAATCTCTTCTCTTTGTTTCTCTCTTTCGATTAGGGTTGCTTAACGT GTATGTGTTTTACCTTTTGTTTTTTATTTTTCCGTTCTATTTCTAACTGTCCTTTCCTTA GAGTAAGTGACTAAGTATACCTTTCCTTCATCCGGTACTTGCTGGCCGAAGTAACATTTT GAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGTGTGACGAAATCAAGGAAACGAA AAATAGATTCCACGTTTTAGGGAAAAAACAACCACCAAATTCTTAGCCCAGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5737#0      GAGGCAAGAATCGGCACGTGGAAGGAAACGAAAAATAGATTCCACGTTTTAGGGAAAAAA 60
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      CAACCACCAAATTCTTAGCCCAGTAAAGTCCTTGTTGGTTCAGGATGGACGTTCCCTTTT 120
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TCGGTTCAGTATTAGATCGCTAACGAAAAAGGAATCTTATAAAAAGAAGAAACCCACTCA 180
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      AAAACACAAACTTCAAGCTGGTCAAATAATCGACCCTTTTTGGCATCCGAAAAGATTCGA 240
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TTGGAGACCCTGTGAAGGATTTTCAAACCTATTAACTGTTGAGGAATTGTTTGCATAGTT 300
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TCTTTATTTTGGCGTAAGCGACTTTTCTACTGTTGTTTGGTTCGTTATTTGCTATTCTGT 360
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      GTCATAATGTGTCACCAGTGTCGATGTTATGTGTTGTTATTGTTGTTGTTGCGTGTATCA 420
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      GCAAGTGAGGATAATTTGCAAAAAAAAAGAACGCTTCTTGTCTTGAACCATAGCGAGGAA 480
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      AAATAGTAGGAAATAAATAAAGCAGCAACAAAATCCGACACCGGCGACTGAAAGGATGCT 540
consensus_5737#1      ----------------------------------------CCGGTGAAAGACGAAGCGAT 20
                                                              **** **  **      * *

consensus_5737#0      -AGGAG-AGAAAATTCAAAAAATCGTACTGAAGTTATATTGATAAGGTATTGTAGAACAA 598
consensus_5737#1      CAGGAGTAGGGCGTTAGGAAAATTTTG--GAACCCGCGCGGA-AGGGTGCGTTATTGCGC 77
                       ***** **    **   *****  *   ***        ** * ***    **   *  

consensus_5737#0      TTTTCTCTTAGCTTACTCACATAAACAAAACAAAACACACCCGTACACATCTTCTAGCAC 658
consensus_5737#1      CCGCCCCGGCTCCTGTGCAACTGAATAGT-CTGATTTCTTTAGTTAATATAGCCTGTCCG 136
                          * *    * *   **  * ** *   *  *   *    **  * **   **  *  

consensus_5737#0      ACTTTATGATGCATATTTGAGAGCACAGCGCTGTTAGTGGGGTATCAGTCGAGGCAAAGG 718
consensus_5737#1      AATAGAGAATGA------GAGAAACCTTTTTTTTTTTTTTGGTACGAAACAGAAGTAAAC 190
                      * *  *  ***       ****   *     * **  *  ****  *  *      **  

consensus_5737#0      GTCTGCTATTAAATCGTACACATACATCAAGCAGATACTGAGCAGAAAAAGTAGGGGAAA 778
consensus_5737#1      GCAGCGTGTGGCGTGTTTGTTATACGCGAAGCTGTTTTTGGCCAC------------CAA 238
                      *     * *    *  *    ****   **** * *  **  **              **

consensus_5737#0      AACACTATCAGAAAATACAGTTGTAGAATGTACTAAACCACCAATACATTGCCGTTGGCT 838
consensus_5737#1      AACACGAACAGAACAGA-ATCTCTTCTCTTTGTT--TCTCTCTTTCGATTAGGGTTG-CT 294
                      ***** * ***** * * *  * *    * *  *   *   *  *  ***   **** **

consensus_5737#0      TTATTTGTTTCGAAATCGGCTTCATGTTTCTGTTTGCTACTCTACTGCAAATTGTTTAAC 898
consensus_5737#1      TAACGTGT------ATGTGTTTTAC-CTTTTGTTTTTTATTTTTCCGTTCTATTTCTAAC 347
                      * *  ***      **  * ** *   ** *****  ** * * * *     * * ****

consensus_5737#0      TGTTGTTTAATTATAATCAGACGAGAAGAACAAACAAATCGCACACTTCCAAATGAGTAA 958
consensus_5737#1      TGTCCTTTCCTTAGAGTAAGT------GACTAAGTATACCTTTC-CTTC--ATCCGGTAC 398
                      ***  ***  *** * * **       **  **  * * *   * ****  *    *** 

consensus_5737#0      TAGTTAATTGAAG---CGTTTTAGAGCGTTATTTCTAACGATTGTTTTGTTGGCACAACA 1015
consensus_5737#1      TTGCTGGCCGAAGTAACATTTTGAAACACTGCGTGTGAGTGTGTGTGTGTGTATGTGCGT 458
                      * * *    ****   * ****  * *  *   * * *   *   * ***          

consensus_5737#0      AAAATGGAGGCTGGTAAATAGGGTGTCCTCTTTGGATTGCATTATTCAGTATGCCCCCGA 1075
consensus_5737#1      GTGACGAAATCAAGGAAACGAAAAAT-------AGATTCCACGTTTTAGGG-------AA 504
                         * * *  *  * ***       *        **** **   ** **          *

consensus_5737#0      TATGCCATTATTAAGTGTCCTATGACCATGGACACAGGCAAACAAACACACATAAGGAAA 1135
consensus_5737#1      AAAACAACCACCAAAT-TCTTAGCCCAGTA------------------------------ 533
                       *  * *  *  ** * ** **   *  *                               

consensus_5737#0      ACACATTTCTTCAACGTGTGGCTGTCGAGTGCTGATTACAAACTTAACAAGACATAGATG 1195
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TACCAAGGTACAGAATAGATCAAAAGCAACGTAAATCGAACTGGAGACTGTTGTTTGACA 1255
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      CAGAACACACTCTCTCACTCCCAAACACACAAGCAACACACACAGACACACAAACGGTAA 1315
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TTACAAAAATTCGAACCGAAAATGAAATGAGAACTTATAAATGTATGGGTGCTTCTATAT 1375
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      GAAACAAAAAAATATATATAAATAGGTATATATATAGTGAGAGAAAGAGAGAAAGAAAGA 1435
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      GAAAGAAAGGGTAAAGATAGTAACGAGCGTAAAAGGAAAGAAAACAAATACAGAATGATA 1495
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      TACATATATATACATCTATATTTAAAAAAAGAAAAACAAAAAAACACAAAACTTAAAGCG 1555
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      AACGAAGAAATAAGAGAAAGAATAAGGAAGTTACAAAAGAATTACAAAAAAACTAGTATA 1615
consensus_5737#1      ------------------------------------------------------------
                                                                                  

consensus_5737#0      ACAACACACAAAAGATTGACTGTGACTGACCGTTGGTAGC 1655
consensus_5737#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)