These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1267 fasta sequence [CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCTCGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGGCGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTCTCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATTGAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTGTAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCTTTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGCTTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCTCGGGTTCC] [+] EMBL BM627566 [CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCTCGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTA ] [+] EMBL BM601730 [ cCGGACGATGGGCAGCGGTCACCGGTCGGCGGTCCCGCCGGCAGTACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGGCGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTCTCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATTGAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTGTAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCTTTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGCTTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCTCGGGTTCC] consensusID : consensus_5741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [GACCCACGCGTCCGGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAATAACGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAAGCCACGCGTGCATACATACAGAGACACAGTAATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCGACAAGGATTGCATTTCGCTGCGCTCTTGCTTCAAGAG] [+] EMBL BM622731 [GACCCACGCGTCCGGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGACGATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCCCGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATGCCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCGTCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGGCAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCTTCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATCGGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAATAACGCTTCGGCGCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATAAAGCCACGCGTGCATACATACAGAGACACAGTAATATCAGGAAGAACGCAAAGGCTTTCATCCCGCGTTGCGAAGGTTGGTCGACAAGGATTGCATTTCGCTGCGCTCTTGCTTCAAGAG] consensusID : consensus_5741#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGGTAAGAGACAATCACCAATTTCCCAGTACACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACTCTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATCTCTGGAACTACTAGTCCTCTTCTGCTTCACTAGTCGGCTAATACTTTAACACATG] [+] EMBL BM653449 [CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGTCGGCGCCATGTTCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCCTCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGGTAAGAGACAATCACCAATTTCCCAGTACACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACTCTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATCTCTGGAACTACTAGTCCTCTTCTGCTTCACTAGTCGGCTAATACTTTAACACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5741#0 CCGCGTACATCTGTGCGACCGGTTTGCTTCTGAGCGCGCCCCTGCTGGTCGGCGCCATGT 60 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TCTCGGTGCGGGCGAACATTTACGCGACGTATGCGCTAATCTTTTTCGGCGAACTTGCCC 120 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TCAATCTCAATTGGGCGATCGTAGCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGAC 180 consensus_5741#1 -------GACCCACGCGTCCG--GCGGACATTCTGCTGTACGTCGTTGTGCCTACGAGAC 51 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 GATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCC 240 consensus_5741#1 GATCGACCGCAGAGGCCTTCCAGATTCTTATCTCGCACGCATTCGGTGATGCTGGCAGCC 111 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 CGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATG 300 consensus_5741#1 CGTACTTCGTGGGTGTGATTTCGGAATCGATCAAGCGAGTGCTTCGCATCGTGCACGATG 171 consensus_5741#2 ------CCGCCGGTTTGCTTCTGAGTGCGCCCCTGCTGGT-CGGCGCCATGTTCTCGGTG 53 ** *** ** ** * ** * ** ** * *** ** * ** ** consensus_5741#0 CCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATTGCCG 360 consensus_5741#1 CCGTCGCAACCGATGCGTACCACCCGAGCGTCGAATCGTCGTCCTCCCACTCGATCGCCG 231 consensus_5741#2 CGGGCG-AAC--ATTTACGCGACGTATGCG-CTAATCTTTTTCGGCGAACTTG-----CC 104 * * ** *** ** * ** *** * **** * ** * *** * * consensus_5741#0 TCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGG 420 consensus_5741#1 TCCTGTCGCAGCTGGCCGAAAACTCGACCGTGGCCATGCTGCAGGCCGCCAGCCCGCCGG 291 consensus_5741#2 CTCAATCTCAATTGGGCGA----TCG-TAGCGGACATTCTGCTGGT-AAGAGACAATCAC 158 * ** ** *** *** *** * ** *** **** ** ** * * consensus_5741#0 CAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCT 480 consensus_5741#1 CAGAGGATTCGCCGCTGGTGCAGTTCCGCGCGCTGCAGTACGCGCTGTTTTCCACCTGCT 351 consensus_5741#2 CA----ATTTCCCAGTA-CACTGTTGTGTGTGTGTTTTTTTTTATTCTCGCTCTCTCACT 213 ** *** ** * * *** * * * * * * * * ** consensus_5741#0 TCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATC 540 consensus_5741#1 TCGTGGAGATCCTCGGCGGTGTGTTCTTCCTCGTGACCGCGTTCTACATCGATCGGGATC 411 consensus_5741#2 CTTTGGACCCCAAAAGCTATGTGCTGAGCTCTACCACATC--TCTGGAACTACTAGTCCT 271 **** * ** **** * * ** * *** * * * * consensus_5741#0 GGGCACGCGTCGAAGCGGTGGTGCTAGGCTGTCAGCTAGAGCTAAGCGAGAGTTCCGGCT 600 consensus_5741#1 GGGCACGCGTCGAAGCGGTGGTGCTAGGTAATCAATCAAAT-------AACGCTTCGGC- 463 consensus_5741#2 ---CTTCTGCTTCACTAGTCG-GCTAA-TACTTTAACACATG------------------ 308 * * * ** * **** * * * consensus_5741#0 CGGACGGTAACGGTACGGACGATGGGCAGCGGTCACCGGTCG-GCGGTCCCGCCGGCAGT 659 consensus_5741#1 ------GCACCAGCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAA- 516 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 ACCGGCGGCAGTAGTAGCGCTGCCTTCTCGGCCGCCTCGACCATCGCCGCCTCCTAACGG 719 consensus_5741#1 GCACAAGGCAATAA-AGCCACGCGTGCATACATACAGAGAC----ACAGTAATATCAGGA 571 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 CGCCGGCAGACGTGTGAGGTTATCTAATTGGTGGTGTCCTTCGGTTCGTAACGCTCCCTC 779 consensus_5741#1 AGAACGCAAAGGCTT----TCATCCCGC--GTTGCGAAGGTTGGTCGACAAGGATTGCA- 624 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TCTCTCTGTGCGTGGCGTACTTTACCACGTATGTGTGTGTTACCACTATCGTTACGAATT 839 consensus_5741#1 TTTCGCTGCGCT---CTTGCTTCAAGAG-------------------------------- 649 consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 GAAGGACGCGCGGCGGTGCTTGCTGGAAGGTGGAATCAAAGTTGTTACAATTGTTGTTTG 899 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TAATTCTAAGACACCTCAGTCCAGCAGTTGCCGCAGCAGCGTCAATTAGATAAGTTTGCT 959 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TTCGCACGGCGCTGCTTTTGGTTTTTTAGGTAATCAATCAAATAATGCTTCGGCGCACCA 1019 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 GCTAGGTGGATCCGTATCGGACATGGAAGACGCGTTACCACCGCCAAGCACAAGGCAATA 1079 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 AGAAAGAGAAGCCACGTGTGCATACATAGAGACACAGTTATATCAGGAAGAACGCAAAGG 1139 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 CTTTCATCCCGCGTTGCGAAGGTTGGTCCGACAAGGATTGCATTTCGCTGCGCTCTTTGC 1199 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 TTGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGAAGGATCATTGATCAAATATGCCT 1259 consensus_5741#1 ------------------------------------------------------------ consensus_5741#2 ------------------------------------------------------------ consensus_5741#0 CGGGTTCC 1267 consensus_5741#1 -------- consensus_5741#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||