These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 859 fasta sequence [CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTGTGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATAGGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG-AACTTCCCGTACCTGCACGGCTTCTGGCACATTCTCATCTTCATCTCCG-CCTA-TCCGGCCT-GCGTACT-GTTTGCCTACTTCTTCGTCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTCGAGCTCGGCATACCGTACGTGTCGATCAA] [+] EMBL BM602328 [CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTGTGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGTTGACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTTCCGAGAATTTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATGAAACTTCCCGTACCTGCAC ] [+] EMBL BX623644 [ GTATG TTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATAGGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG AACTTCCCGTACCTGCACGGCTTCTGGCACATTCTCATCTTCATCTCCG CCTA TCCGGCCT GCGTACT GTTTGCCTACTTCTTCGTCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTCGAGCTCGGCATACCGTACGTGTCGATCAA] [+] EMBL BX620332 [ GCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGTGGATTGGTGCGAGGGCAACTATCTCGTATCGNCCGATATTGCGGAGTTTGTGAATACGATCAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGGCCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTCGTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCATACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAATCTTCAAACGTTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCATCCCAGCCACCTACCTGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATANGCTGGGCGTCCGCAATACCACCATCCTGATCATGGCCATCGTTTGCTGGATTAACGATCGCATGTTCTGCGACACCTGGTCGCGGATG AACTTCCCGTACCTGCACGGGTTCTGGCANATTCTCATCTTCATCTCCGCCCTATTCCGGCCTGGCGTACTGGTTTGC ] consensusID : consensus_5747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [GAGAATCCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCCATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAGCGATCGGCATGTNCTGCGAG] [+] EMBL BX469327 [GAGAATCCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGGCAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCCATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGTATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAGCGATCGGCATGTNCTGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5747#0 CCGGCACGCAAAACCCCAATCAACAACAAAGCAAGCCAAAAGTTCACAGCTAAGTTGCTG 60 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 TGTATGTTTTGCTGCAGCAACCATGACTTGGGAACATCTAGAACGAGGAAGCTCGCCAGT 120 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 GGATTGGTGCGAGGGCAACTATCTCGTATCGCCCGATATTGCGGAGTTTGTGAATACGAT 180 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 CAGCAACATTCTCTTCCTGCTCGGGCCACCGTTCCTCATCTACCTGTTCAAAGACTACGG 240 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 CCGCTTCATACAGCCGGCCATCCATCTGATCTGGGTGCTGCTGATCGTGGTGGGGCTTTC 300 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 GTCCGCCTACTTCCACGCCACCCTAAGCCTGCTCGGCCAGCTGCTGGATGAGCTCACCAT 360 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 ACTGTGGGTGTTTATGGCCACGCTGAGCCTGTTCTGTCCGCGGCGCCACTTCCCGCGAAT 420 consensus_5747#1 ------------------------------------------------------GAGAAT 6 * **** consensus_5747#0 CTTCAAACG----TTCCAGGAAACGTTTCTGTCTGTCCATGACGATATTTTCCATCGCGG 476 consensus_5747#1 CCTCGAGCAAGAATCGCACGAGGTGTATCTGTCTGTCCATGACCATATTTTCCATCGTGG 66 * ** * * * ** ** ** **************** ************* ** consensus_5747#0 CAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCC- 535 consensus_5747#1 CAACGGGGCTTTCGTTTTGCCATCCCGCCATCAATGCGTTCGCGCTCATGTTTCTAGCCC 126 *********************************************************** consensus_5747#0 ATCCCAG-CCACCTACCTG-CTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGT 593 consensus_5747#1 ATCCGAGGCCACCTACCTGGCTGTACAAGGAGCTTAAAATCGTGCAGGATGAGCGCGTGT 186 **** ** *********** **************************************** consensus_5747#0 ATAGGCTGGGCGTCCGCAATACCACCATCCTGA-TCATGGCCATCGTTTGC-TGGATTAA 651 consensus_5747#1 ATCGGCTGGGCGTCCGCAACACCACCATCCTGAATCATGGCCATCGTTTGCATGGATTAG 246 ** **************** ************* ***************** ******* consensus_5747#0 CGATCG-CATGTTCTGCGACACCTGGTCGCGGATGAACTTCCCGTACCTGCACGGCTTCT 710 consensus_5747#1 CGATCGGCATGTNCTGCGAG---------------------------------------- 266 ****** ***** ****** consensus_5747#0 GGCACATTCTCATCTTCATCTCCGCCTATCCGGCCTGCGTACTGTTTGCCTACTTCTTCG 770 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 TCAACGACGAGCGGNCGGAAAGCCGGNCCACGCTCAAGTACTGGNCGCGGAAACGATTTC 830 consensus_5747#1 ------------------------------------------------------------ consensus_5747#0 GAGCTCGGCATACCGTACGTGTCGATCAA 859 consensus_5747#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||