These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 923 fasta sequence [GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC-CACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGCCCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAAGC] [+] EMBL CNS08WH4 [GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC CACAGGGACGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGCTCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAA ] [+] EMBL CNS090I2 [ GTCCTTCGAGCCGGATCGAAACGGCAAACAGGGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCC CACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTG AACGTCCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAAGCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTATCACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTTGTGAAAGCCACCGCAACACCGAAGTAATGCGACGCGGAATAAGC] [-] EMBL CNS090I3 [ AGTCTCGCTCTGCATACGCGTTGTGTTTCCACACAGGGATGATCGTGGATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAAGGCATCTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGAAAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCG TCGCGCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGACACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGACCGAGGTGATCAATGGCGTTGACATTCCACCGGACAGCTGAGAAGTAGAGCCACGGTGAGAGAGACCAACGGTACGTCATGGTCAA CTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACGAGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTACAT ] consensusID : consensus_5755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [ACGGCACGAGGTCTATTNTATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNNGCCTACATGATTGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAGAGAGAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTCCACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA] [+] EMBL BX619689 [ACGGCACGAGGTCTATTNTATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGGTTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNNGCCTACATGATTGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAGGTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAATTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAGAGAGAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTTAAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTCCACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5755#0 GGTCTGTTTATCTCCGCTCGGCGAAGATGGTCCTTCGAGCCGGATCGAAACGGCAAACAG 60 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 GGGCCATTTTAAAAGTCTCGCTCTGCATACGCGTTGTGTTTCCCACAGGGATGATCGTGG 120 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 ATTTTGCAGGAACCTGTTGCTGCAACAGCATACACACAGTGCAGGCAAACGGAA-GGCAT 179 consensus_5755#1 ------------------------------------------------ACGGCACGAGGT 12 **** * * * consensus_5755#0 CTATGTGTGAGTGTGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGA-AAGG 238 consensus_5755#1 CTATTN-----TATGTGTGTGTGTGTGTGTATACCTGACCCACAGTCTGTCCCGNGNAGG 67 **** * ***************************************** *** consensus_5755#0 TTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCGC 298 consensus_5755#1 TTCACCCCGACGTTGCCCGTAATTACGTCATGAGCTTTCGGTGTGTGTGAGTGCGCTCNN 127 ********************************************************** consensus_5755#0 GCCTACATGACTGCAGCAGCAGCAGCAGCAGCAACAGCAGACTACCTGCCCTTCTAATAG 358 consensus_5755#1 GCCTACATGATTGCAGCAGCAGCAGCAGC---AACAGCAGACTACCTGCCCTTCTAATAG 184 ********** ****************** **************************** consensus_5755#0 GTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAA 418 consensus_5755#1 GTAAAATTCCATCCTCTTCCAAGCCAGACATGTGGCCAGGCTAGATGGTTTCAGTGTTAA 244 ************************************************************ consensus_5755#0 TTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGA 478 consensus_5755#1 TTGAAACAAGTACGCCACGACAAGCAGAAAGTTTGTGTGTGTGTGAG----------AGA 294 ********************************************* * ** consensus_5755#0 GAGAGAGAGAAAGGGAACTGGTGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTT 538 consensus_5755#1 GAGAGAGAGAAAGGGAACTGGCGAGAGAAAGAGAAGACGCTGGAGAAGAAAAAGAAAGTT 354 ********************* ************************************** consensus_5755#0 AAACAATGATCGCCGTGGAAAAGTGAAACGCCCGAGGTGATCAATGGCGTTGACATTC-- 596 consensus_5755#1 AAACAATGATCGCCGTGGAAAAGTGAAACGATCGAGGTGATCAATGGCGTTGACATTNTC 414 ****************************** ************************* consensus_5755#0 CACCGGACAGCTGAGAAGTAGAGCC-ACGGTGAGAGAGACCAACGGTACGTCATGGTCAA 655 consensus_5755#1 CACCGGACAGCTGAGAAGTAGAGCCCACGGTGAGAGA----------------------- 451 ************************* *********** consensus_5755#0 GCTCCGCTCACTCTCTATCAAACGCACACATCCACACATATAGTCACACACACACATACG 715 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 AGAGTGCGCCCAAGAATGTTTGAAAAACAAAGCGTCACAGTGGCTCACTAATCGGACTAC 775 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 ATCTCGAACGGCGGGGCGGTATCGATGGACAGTCGAGCGCCCACGCACAGGTTCCCTTAT 835 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 CACGCCCGGCTAGATTGAAAATGCGCACTGTGTAGTCGTGTGTCGTGAAAGCCACCGCAA 895 consensus_5755#1 ------------------------------------------------------------ consensus_5755#0 CACCGAAGTAATGCGACGCGGAATAAGC 923 consensus_5755#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||