These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTATTATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGGGAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGACGACGATGCTGGTTATTATTATTATATTATAATTATTACAAACCAACTACTTGCAACACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTGCATCGAGGAAAGGAGTAGGAAAAAAATGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT] [+] EMBL BX615106 [CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTATTATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGGGAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGACGACGATGCTGGTTATTATTATTATATTATAATTATTACAAACCAACTACTTGCAACACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTGCATCGAGGAAAGGAGTAGGAAAAAAATGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT] consensusID : consensus_576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [AAAATGTTTCTTAAACTACAAGCGAATGTGAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAACAAAATTTTCT] [+] EMBL BX614292 [AAAATGTTTCTTAAACTACAAGCGAATGTGAAATGGCGGGAGACAAGAAAACACAAAACCACATCACACATTATACACAGCAACACACACATACACAGCACAAGATAGTAAATGTTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGATAGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAACAAAATTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_576#0 CACACACACCTTTACATGGAAACACTCTGCTATAGCGATTATTATTATTAATATTATTAT 60 consensus_576#1 ------------------------------------------------------------ consensus_576#0 TATCATGACTATCCGTGTGTAAGGAGCGCTCTCCCGTCAATGGGGTGGGTGGGTGGTGGG 120 consensus_576#1 ------------------------------------------------------------ consensus_576#0 GAGGCAAAGCTCCTGTCATCATTATTATCAGTATATGATAGTGGTGATCAATGATGATGA 180 consensus_576#1 ---AAAATGTTTCTTAAACTACAAGCG--AATGTGAAATGGCGGGAGACAAGAAAACACA 55 ** * * ** * * * * * * ** * ** *** * * consensus_576#0 CGACGATGCTGGTTATTAT-TATTATATTATAATTATTACAAACCAACTACTTGCAA--- 236 consensus_576#1 AAACCACATCACACATTATACACAGCAACACACACAT-ACACAGCACAAGATAGTAAATG 114 ** * ***** * * * * ** *** * ** * * ** consensus_576#0 --CACACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGAT 294 consensus_576#1 TTTATACAGCTCCACGGGAGAAGGCGAGGCGCGTGTGTAACAATTTCAGCTACTGCAGAT 174 * ******************************************************* consensus_576#0 AGAGAGACAGAGAGTGAAGTGAGTGTGTGTGT-GCATCGAGGAAAGGAGTAGGAAAAAAA 353 consensus_576#1 AGAGAGACAGAGAGTGAAGTGAGTGTGTGTGTTGCATTTAGGAAAC--------AAAATT 226 ******************************** **** ****** **** consensus_576#0 TGCTAGTGGAAAGATAATGTGGGGGGAATTGGGGTTTTTT 393 consensus_576#1 TTCT------------------------------------ 230 * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||