cluster # 5761

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Anopheles gambiae
cluster # 5761 cluster # 5761 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5761#0 length = 704 sequences # 3

consensus_5761#1 length = 596 sequences # 1

consensusID : consensus_5761#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 704
fasta sequence

                              [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGG-ACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGA-CAGCCTACGAGGCGGGCCGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCC-AGACCGGCGGCGTGGTGTACGCGGACAAGTCGCCCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC]

[+] EMBL BM654001             [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCGCATCGCAAGG ACCTCTGAAAACAAAC    ACACA  CACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTGCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATATTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGA CAGCCTACGAGGCGGGCCGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCC AGACCGGC                                                                                 ]
[+] EMBL BX627285             [              GCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGG ACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCGAGGACCTGAAGCTGACCAG CTACNAGGCGGG CGTGAAGACGGTCGAGGCTGCCCCGGCCGTCACCTACACCGCCAAGACCGCCGGCGTGGTGTACGCGGACAAGTCGCCCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC]
[+] EMBL BX627425             [                                     TATCCTCGAGCAGCGTTCCACATCGCAAGGNACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCANCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCATCCTACAGCTCGTACGAAGCGTCCCCCGCC                                                                                                                                                                                               ]




>consensus_5761#0
CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT
CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACACCACGTGCTGTTTTGT
AGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAA
AGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATTTAAAGCGCGTTC
GTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCC
TGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCG
GCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCA
GCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCG
GTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACGGTGCGTCCGGCG
AGGACCTGAAGCTGACAGCCTACGAGGCGGGCCGTGAAGACGGTCGAGGCTGCCCCGGCC
GTCACCTACACCGCCAGACCGGCGGCGTGGTGTACGCGGACAAGTCGCCCGCCGCCACCT
TCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC

consensusID : consensus_5761#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAATAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCAGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG]

[+] EMBL BM643100             [CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACATCGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAATAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCAGTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCCGTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATTTAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGTTGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCGGGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGATCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGTACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG]




>consensus_5761#1
CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT
CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAA
TAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCA
GTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCC
GTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATT
TAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGT
TGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCG
GGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGA
TCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGT
ACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5761#0      CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT 60
consensus_5761#1      CCGAACGGCTCTACGCTGTATGTAGAGCAGCAGTACCTATCCTCGAGCAGCGTTCCACAT 60
                      ************************************************************

consensus_5761#0      CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACAC------ACCAC------ 108
consensus_5761#1      CGCAAGGACCTCTGAAAACAAACACATACACACGCACACACACCACGGTACGACTCGGAA 120
                      *******************************************      ** **      

consensus_5761#0      ------------------------------------------------------------
consensus_5761#1      TAAGGAATAGTGCCCAAACCGTGCTGGAACCTATCCGTGCTGATCTTTTCGTTCATTTCA 180
                                                                                  

consensus_5761#0      GTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCC 168
consensus_5761#1      GTGCTGTTTTGTAGCCGTTTTTGTTGAGTGTCGCTAGTGCGTGTGAGAGTGCGTGAATCC 240
                      ************************************************************

consensus_5761#0      GTCCGACGGGAAAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAAAGCACATT 228
consensus_5761#1      GTCCGACGGGAGAGCAAGTCGGCGTCCCGGTTCCTAATATCCTGCGGGATAGAGCACATT 300
                      *********** *************************************** ********

consensus_5761#0      TAAAGCGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGT 288
consensus_5761#1      TAAAGAGCGTTCGTTTCACTCGCAAAGTGCACATCATGAAGATGTTTGCTGCCGTGCTGT 360
                      ***** ******************************************************

consensus_5761#0      TGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCG 348
consensus_5761#1      TGGCGGCCTGCCTGGCCACATCGAGCCTGGCCAGCCCGGCCCCGGACTGTCCACCGAGCG 420
                      ************************************************************

consensus_5761#0      GGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGA 408
consensus_5761#1      GGCACGTCTCCGGCTACTCCTACCCGGCCCCGACCGTCCAGCTGTCCGTCGGCAAGGCGA 480
                      ************************************************************

consensus_5761#0      TCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGT 468
consensus_5761#1      TCAACTCGGTCAGCGTGACGCCCGGCTTCTCCTCCTACTCCGTCGACGGTGAGGTGAAGT 540
                      ************************************************************

consensus_5761#0      ACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCGTACG 528
consensus_5761#1      ACGCGTCGGTCGGTCCGTCCTACAGCTCGTACGAAGCGTCCCCCGCCTACAGTGCG---- 596
                      ********************************************************    

consensus_5761#0      GTGCGTCCGGCGAGGACCTGAAGCTGACAGCCTACGAGGCGGGCCGTGAAGACGGTCGAG 588
consensus_5761#1      ------------------------------------------------------------
                                                                                  

consensus_5761#0      GCTGCCCCGGCCGTCACCTACACCGCCAGACCGGCGGCGTGGTGTACGCGGACAAGTCGC 648
consensus_5761#1      ------------------------------------------------------------
                                                                                  

consensus_5761#0      CCGCCGCCACCTTCGCTTCCGTGGTGCCGTCGGTCAGCTACACCAAGACNGTGGCC 704
consensus_5761#1      --------------------------------------------------------