These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1410 fasta sequence [TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACGATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGTCGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTCCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGCTCGAGCCTTTCCGAGGGTGGCGCCAGCGGTGGTGCCGCATCCGGTGGGAACATTCTCGGCTGCGAGCAGCTCCTGCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGGTGCAGCGAAAACCACCCGCCAGCTACACGAAGGTCGTCGTCAAGGGCATGGCAAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAAGATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCAACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAGCACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAATTGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTCGCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAACTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCATAAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA] [+] EMBL BX628155 [TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACGATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGTCGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTCCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGC ] [+] EMBL BM604913 [ ccgGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCACGCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGCTGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCAGGCCAGGTGATACACAACTTCCTCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTCTCGCGACGGCCGAATATTGTCTCGAGACCGTCCAGCAGCTGGAGGACAAGCTGAAGGAAAAGATCGACAAGCAGTACGTCGCCAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATCGCATCATTTCCAACTGCATCCAGCTGCTGGTACACGATCTCGATGCGGCCTGCGAACAGTCGCTGCTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGGGCGACCAGAGCGGCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATCTGGCCAACAGCCGCAAGTATTACACGCAG ] [+] EMBL BX622380 [ CGGCCGACCTCGTCCGGCTCGTCGTCCGCATCGGGCACGGCAGCGCTGGTCGCCAGTGCGTCCAGCTCGAGCCTTTCCGAGGGTGGCGCCAGCGGTGGTGCCGCATCCGGTGGGAACATTCTCGGCTGCGAGCAGCTCCTGCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGGTGCAGCGAAAACCACCCGCCAGCTACACGAAGGTCGTCGTCAAGGGCATGGCAAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAAGATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCAACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAGCACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAATTGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTCGCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAACTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCATAAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA] consensusID : consensus_5774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [ACTTACATATANCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCATCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGNNTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCTGCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGGTGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGGCCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANNCCCANNNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGAAAGCAGCGTGGTAGAGTTCACAAGATACTGGAGATGAAGAATGTGTCGCAGATCGAGCC] [+] EMBL BX624248 [ACTTACATATANCCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCATCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGNNTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCTGCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGGTGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGGCCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANNCCCANNNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGAAAGCAGCGTGGTAGAGTTCACAAGATACTGGAGATGAAGAATGTGTCGCAGATCGAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5774#0 TATTCTACAAAAAGTGCATGGTACAGTGTATGCAGCTGAGCAACGAAAAGCCAATGTACG 60 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 ATTTGGTGCTGCTGTTCAAGAAGTATCTTCGCGAGTACGCTGCCAAGGTGCTGGAGGCAC 120 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 GCATTCCCAAACCGCAGCCACCGAACACGACCACCTCCTCGATCAGCTCCAGCATGTCGC 180 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 TGCTGACGAAGGACTTTCAAAACCTGTCCACCGCCGCCGGCCAGGTGATACACAACTTCC 240 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 TCAAGGAGGGTGAAACGCCAAGGTTCTCCTCTGAAGATATGCGCAAGATTTGCTACATTC 300 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 TCGCGACGGCCGAATACTGTCTCGAGACCGTGCAGCAGCTGGAGGACAAGCTGAAGGAAA 360 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 AGATCGACAAGCAGTACGTCGCGAAGGTGGACCTGTCGGACGAGAAGGACGTCTACCATC 420 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 GCATCATTTCCAACTGCATCCAGCTGCTGGTGCACGATCTCGATGCGGCCTGCGAACAGT 480 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 CGCTACTGCTGATGACCAAGATCGCCTGGCACAGCATCAGCAACGTGTGCGACCAGAGCG 540 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 GCTTCGTCAACCAGATCATAACGAATCTCAAGCAAACCGTCCCCGTGATACGGGACAATC 600 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 TGGCCAACAGCCGCAAGTATTACACGCAGTTTTGCCACAAGTTCGTTAACTCCTTCATTC 660 consensus_5774#1 ------------------------------------------------ACTTACATATAN 12 *** ** consensus_5774#0 CCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGT-CCGGCTCGTCGTCCGCA 719 consensus_5774#1 CCAAGTACATCAACACACTGTACCGGCTGCGGCCGACCTCGTTCCGGCTCGTCGTCCGCA 72 ****************************************** ***************** consensus_5774#0 TCGGGCACGGCAGCGC-TGGTCGCC-AGT--GCGTCCAGC-TCGA--GCCTTTCCGAGGG 772 consensus_5774#1 TCGGGCACGGCAGNGNCTGGTCGNCCAGTTGNCGTCCAGCCTCNAAGNCCTTTCCGAGGN 132 ************* * ****** * *** ******** ** * *********** consensus_5774#0 T-GGCGCCAGC-GGTGGTGCCGCATCCGGTGGGAAC-ATTCTCGGCTGCGAGCAGCTCCT 829 consensus_5774#1 NTGGCCCCAGCCGNTGGTGCCCCTTCCGNNGGGAANCATTCTCGGCTGCAACCACCTCCT 192 *** ***** * ******* * **** ***** ************ * ** ***** consensus_5774#0 GCTGGACACGCACAGCCTGAAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCGCAGG- 888 consensus_5774#1 GCTGGACCCCCACAGCCCTGAAACGGTGCTGATGGATCTGCCCTCCATCGGGTCCCAGGG 252 ******* * ******* ********************************** **** consensus_5774#0 TGCAGCGAAAACCACCCGCCAG--CTACACGAA--GGTCGT-CGTC---AAGGGCATGGC 940 consensus_5774#1 TGCACCAAAACCCACCCGCCCAGCCTACNCCAAAGGGTCNTTCGTCCAAGNGGNCTTTGG 312 **** * *** ********* **** * ** **** * **** ** * * * consensus_5774#0 AAAGGCGGAAAGCAGCGTGGTAGAGTTTCACAAGATACTGGAGATGAAGAATGTGCGCAA 1000 consensus_5774#1 CCAAGAGGCCGGAAAATTNAANTAAATTAAAANGGTNCNNTGGANTGCCAANN--CCCAN 370 * * ** * * * * ** * * * * * ** ** * ** consensus_5774#0 GATCGAGCAGCAACAGCTGGTGGAAGCTTACAAGCGGGCTTGCCCGCAGCTGCAGCAGCA 1060 consensus_5774#1 NNCCNNNNNGGGCGNNCCCCTCCTACCTTNCAAGCCAGTAACCCTGAAGCTGATGCCCGA 430 * * * * * *** ***** * ** * ***** ** * consensus_5774#0 ACCGCCGACGTCCTCGGCTACCGCTGGCAGTCAGGCGGTGGGCGCCGAAAGTGGCAACAG 1120 consensus_5774#1 A--AGCAGCGT-----GGTAGAGTTCACAAG-ATACTGGAGATGAAGAATGTGTCG-CAG 481 * * *** * ** * * ** * * * * * *** *** * *** consensus_5774#0 CACGCAGCAAAGCAACGAACCGCCCACTTCGGGCGGGAATTCAACGCAATCGCAGCAAAT 1180 consensus_5774#1 ATCGAGCC---------------------------------------------------- 489 ** * consensus_5774#0 TGCAGCGGCTGCAGCCGCAATCAGTGGCGCCGGTTCCAGTATTATGGCCCTGGGAGACTC 1240 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 GCTAATGGACAAGGGAAGAATTAAGAAGATAGAAAATTTAATCAAAAATCGGTTACCGAA 1300 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 CTAGTGCGGCTAGAAATCCCATTTCCCTTGGTTTCCCTTACGCATTCGGTATTTGCCCAT 1360 consensus_5774#1 ------------------------------------------------------------ consensus_5774#0 AAATACATAAGCTTAACAAGGGTGATGTACGTTAATAAAATAATCAAACA 1410 consensus_5774#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||