These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAACGGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCTGCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCTTTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAGGGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAACACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTTGAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGCTTTGC] [+] EMBL BM643157 [CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAACGGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCTGCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCTTTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAGGGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAACACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTTGAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGCTTTGC] [-] EMBL BX618444 [ CAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCAGCCACCCATCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGA ] [-] EMBL BX605335 [ gcCGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAA GGGGCCGTAGTATAGTTTTAATAATTATAAACACAC ] consensusID : consensus_5775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [ATGGCAGCCCAAACCGCCCAAGCCCAACCCCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGGTGTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCAGCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG] [-] EMBL BM655373 [ATGGCAGCCCAAACCGCCCAAGCCCAACCCCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGGTGTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCAGCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5775#0 CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAAC 60 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 GGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCT 120 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 GCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCT 180 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 TTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAG 240 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 GGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGC 300 consensus_5775#1 -------------------------------------------ATGGCAGCCCAAACCGC 17 * * * * *** ** consensus_5775#0 AGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGG 360 consensus_5775#1 --CCAAGCCCAACC--CCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGG 73 **** ** ** *** ************************ *************** consensus_5775#0 TAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGA 420 consensus_5775#1 TAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGA 133 ************************************************************ consensus_5775#0 CCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCT 480 consensus_5775#1 CCTAAAGAAACGCAACGCACGTGGT-GTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCA 192 *********************** **** ** * * ** *** * ** consensus_5775#0 ATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAAC 540 consensus_5775#1 GCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG-------------- 238 * * * * *** ** ** **** consensus_5775#0 ACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTT 600 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 GAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGC 660 consensus_5775#1 ------------------------------------------------------------ consensus_5775#0 TTTGC 665 consensus_5775#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||