cluster # 5775

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Anopheles gambiae
cluster # 5775 cluster # 5775 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5775#0 length = 665 sequences # 3

consensus_5775#1 length = 238 sequences # 1

consensusID : consensus_5775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 665
fasta sequence

                              [CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAACGGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCTGCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCTTTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAGGGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAACACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTTGAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGCTTTGC]

[+] EMBL BM643157             [CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAACGGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCTGCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCTTTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAGGGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAACACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTTGAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGCTTTGC]
[-] EMBL BX618444             [                                                                                                                                                                                                                                                                               CAAAATCGATAGAAAGTACTCTAAATGGCAGCCAACGCCAGCCACCCATCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGA                                                                                                                                                                                                                                                            ]
[-] EMBL BX605335             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 gcCGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCTATCTCGTATATATTAAGGAGGGAAGAA GGGGCCGTAGTATAGTTTTAATAATTATAAACACAC                                                                                                                         ]




>consensus_5775#0
CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAAC
GGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCT
GCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCT
TTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAG
GGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGC
AGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGG
TAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGA
CCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCT
ATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAAC
ACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTT
GAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGC
TTTGC

consensusID : consensus_5775#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [ATGGCAGCCCAAACCGCCCAAGCCCAACCCCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGGTGTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCAGCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG]

[-] EMBL BM655373             [ATGGCAGCCCAAACCGCCCAAGCCCAACCCCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGACCTAAAGAAACGCAACGCACGTGGTGTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCAGCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG]




>consensus_5775#1
ATGGCAGCCCAAACCGCCCAAGCCCAACCCCACCGCCCACTGTCGCCGACATTCGTCGTC
GTTCTAATAATGGTAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATT
GCTTGATTACTGACCTAAAGAAACGCAACGCACGTGGTGTCCGTCCCCTCCTACCAGCGA
TTTCTTCCCCCAGCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5775#0      CCGTAAAGATGTACCGATCTTTTTTTGTTTGTTTAAGAATAAACGATCAACATATCTAAC 60
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      GGAGCAACGATCTTACATTAAATAGACACTTTAATTCACCATCTACCATCTGTTGCTGCT 120
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      GCTGCTTGCTTACTAGTTCTACTTTGTTTTTTGTTTCTTTTACTACGTTTTCTTTGTTCT 180
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      TTTCGAATTCAATCAACAACTAGTTCTGCCTCGATCCACCGATTGAAACGACCACAAAAG 240
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      GGGGAACACGGGCGAATGAACGGGAGCGATACAAAATCGATAGAAAGTACTCTAAATGGC 300
consensus_5775#1      -------------------------------------------ATGGCAGCCCAAACCGC 17
                                                                 *  * *  * ***  **

consensus_5775#0      AGCCAACGCCGGCCACCCATCGCCCACTGTCGCCGACATTCGTCTTCGTTCTAATAATGG 360
consensus_5775#1      --CCAAGCCCAACC--CCACCGCCCACTGTCGCCGACATTCGTCGTCGTTCTAATAATGG 73
                        ****  **  **  *** ************************ ***************

consensus_5775#0      TAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGA 420
consensus_5775#1      TAAAGTTACTTTGTGAAATTGAACTTGCTTTTGTTGCTGTGTGTATTGCTTGATTACTGA 133
                      ************************************************************

consensus_5775#0      CCTAAAGAAACGCAACGCACGTGCCCGTCCCCTCCTCTGTTTCCTGTATCTCTCTCGCCT 480
consensus_5775#1      CCTAAAGAAACGCAACGCACGTGGT-GTCCGTCCCCTCCTACCAGCGATTTCTTCCCCCA 192
                      ***********************   ****   **    *  *    ** ***  * ** 

consensus_5775#0      ATCTCGTATATATTAAGGAGGGAAGAAGGGGGCCGTAGTATAGTTTTAATAATTATAAAC 540
consensus_5775#1      GCGTGACGTCACGCAGCGCGGGTCACCAGGCGCATTAGTCCGCCGG-------------- 238
                         *    *     *  * ***      ** **  ****                     

consensus_5775#0      ACACATTTGCACGTGCACGGCGCGGCGCATGGCTTCCCCATGACAATTCGATTGATTTTT 600
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      GAACCGATCGGTTTTGTGTGTTCGATCTCGATCTCGATGCCAGTCGAATAAAACCATTGC 660
consensus_5775#1      ------------------------------------------------------------
                                                                                  

consensus_5775#0      TTTGC 665
consensus_5775#1      -----