These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG] [+] EMBL BX469059 [GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG] consensusID : consensus_5778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence [CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT] [+] EMBL BM605238 [CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCG ] [+] EMBL BX612386 [ GTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTTGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT] [+] EMBL BM630209 [ ccGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5778#0 GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 60 consensus_5778#1 ------------------CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 42 ************************************** consensus_5778#0 TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 120 consensus_5778#1 TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 102 ************************************************************ consensus_5778#0 CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 180 consensus_5778#1 CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 162 ************************************************************ consensus_5778#0 TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 240 consensus_5778#1 TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 222 ************************************************************ consensus_5778#0 CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 300 consensus_5778#1 CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 282 ************************************************************ consensus_5778#0 ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCC-GGCCG 359 consensus_5778#1 ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCG 342 *********************************************** ****** ***** consensus_5778#0 GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTG 419 consensus_5778#1 GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGG-CCCAGCTG 401 *************************************************** ******** consensus_5778#0 GAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCG 479 consensus_5778#1 GAGCATCAAGCGGTGCGCGCCATGAA-CCTCGAGCTAATGG-CCGAG--TATGGG-TGCG 456 ************************** ************** **** ***** **** consensus_5778#0 AGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGT 539 consensus_5778#1 AGA-TGTGG--AAGTCG-TACCTC--GAAACG---TTGGTCACGAT-GCAGG--CCAAGT 504 *** *** * ****** ****** ***** * ******** ***** * **** consensus_5778#0 TGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATT 599 consensus_5778#1 G--TCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCG--C 560 ***** ** * * *** * * * * *** ** *** ** consensus_5778#0 ACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACA 659 consensus_5778#1 AAGACGAAACAAACGC---AGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTG 617 * ** ** ** * * * * * * * * ** *** * consensus_5778#0 AAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAG 719 consensus_5778#1 ATGCTGGTGT-CGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAAT 676 * ** ** * ** * * * *** ********* * *** consensus_5778#0 --ACGGCNCAGTNTGGTGTTTGAATNTACT-TGNGGTGTTTCCACAGA-GAACGTTCCGA 775 consensus_5778#1 CTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGG 736 ** * * ** * ** *** * * * ** * *** * * * consensus_5778#0 G-------------------------------- 776 consensus_5778#1 TGGATCGATTAAGCATAATAATTATAATATTAT 769 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||