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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5778#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG]
[+] EMBL BX469059 [GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG]
consensusID : consensus_5778#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence
[CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT]
[+] EMBL BM605238 [CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCG ]
[+] EMBL BX612386 [ GTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTTGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT]
[+] EMBL BM630209 [ ccGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5778#0 GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 60
consensus_5778#1 ------------------CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 42
**************************************
consensus_5778#0 TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 120
consensus_5778#1 TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 102
************************************************************
consensus_5778#0 CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 180
consensus_5778#1 CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 162
************************************************************
consensus_5778#0 TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 240
consensus_5778#1 TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 222
************************************************************
consensus_5778#0 CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 300
consensus_5778#1 CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 282
************************************************************
consensus_5778#0 ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCC-GGCCG 359
consensus_5778#1 ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCG 342
*********************************************** ****** *****
consensus_5778#0 GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTG 419
consensus_5778#1 GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGG-CCCAGCTG 401
*************************************************** ********
consensus_5778#0 GAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCG 479
consensus_5778#1 GAGCATCAAGCGGTGCGCGCCATGAA-CCTCGAGCTAATGG-CCGAG--TATGGG-TGCG 456
************************** ************** **** ***** ****
consensus_5778#0 AGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGT 539
consensus_5778#1 AGA-TGTGG--AAGTCG-TACCTC--GAAACG---TTGGTCACGAT-GCAGG--CCAAGT 504
*** *** * ****** ****** ***** * ******** ***** * ****
consensus_5778#0 TGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATT 599
consensus_5778#1 G--TCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCG--C 560
***** ** * * *** * * * * *** ** *** **
consensus_5778#0 ACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACA 659
consensus_5778#1 AAGACGAAACAAACGC---AGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTG 617
* ** ** ** * * * * * * * * ** *** *
consensus_5778#0 AAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAG 719
consensus_5778#1 ATGCTGGTGT-CGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAAT 676
* ** ** * ** * * * *** ********* * ***
consensus_5778#0 --ACGGCNCAGTNTGGTGTTTGAATNTACT-TGNGGTGTTTCCACAGA-GAACGTTCCGA 775
consensus_5778#1 CTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGG 736
** * * ** * ** *** * * * ** * *** * * *
consensus_5778#0 G-------------------------------- 776
consensus_5778#1 TGGATCGATTAAGCATAATAATTATAATATTAT 769
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||