cluster # 5788

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Anopheles gambiae
cluster # 5788 cluster # 5788 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5788#0 length = 809 sequences # 2

consensus_5788#1 length = 624 sequences # 2

consensusID : consensus_5788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 809
fasta sequence

                              [CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACTTCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTACGGAGTGCGGTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAGCGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACAC-GGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCATACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGTGCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG]

[+] EMBL BM613040             [CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACTTCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTACGGAGTGCGGTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAGCGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACAC GGGCTACGGAGGTGCGTCCGGTCCACAGCT                                                                                                               ]
[+] EMBL BM607092             [                                                                                                     ccgGGTCGATGAGGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCAATCGTTGGGTGTGCAGGTACGCGCGT   GTTGAATATCGCTGTTGTGAAAGTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATCCGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGCCGACACACGGGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCATACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGTGCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG]




>consensus_5788#0
CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACTTCCGGCAGTGAGGA
AAGATAGAATAGCACGGTTGTAATTTACAAAACCTACGGAGTGCGGTCGATGAAGTTGGC
TCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACCGACGAAGCTATCGTT
GGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAAGTATTACTAAATTCC
TCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTGTGCTGTGATCCAGTGATC
CGCCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAGCGTAAAGTAGCAGCAAG
CAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTT
ATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTGGTGGCCGATCTGATC
GCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCGTATGCGACACTTGCC
GGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTGGCGTTGTGTACGCGCTT
CTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTACTATCACTCATGACTAGC
CGACACACGGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCATACTGCTATGCTTCCTG
TCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGTGCGCTGGTCGATCTCAT
CTCGCTGCCCCGTTACGGTGGGCTTCACG

consensusID : consensus_5788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGT]

[+] EMBL BM615593             [CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACA                      ]
[+] EMBL BM613278             [   ccgGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTCGTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGATCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCACATGGCTTTCAGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCAATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGGTAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGACACTTGCCGGTTTAGAGCCACAGT]




>consensus_5788#1
CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTC
GTGTACTACCTCGGGCGCCACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAGA
TCGGTGACGGGCGAGGGTGGCGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCGCAC
ATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGAGGCA
ATACGACGCACGCACGTTTCACCAGGCGAACACAGGCTGTGCTGGAGTGGCAGTGCCGGG
TAGTGAGGAAAAGTAGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCTTTGCAGAAC
GGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCACGGTAAAGTA
GCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTATCACGCGTGG
AGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCGTCGTGGCCG
ATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGGCATATGCGA
CACTTGCCGGTTTAGAGCCACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5788#0      ------------------------------------------------------------
consensus_5788#1      CCGCGAGGCGAACGGGTCTGGAAAGCAATAGCTGCGCGTTCTTCCTATCGAAATCGTTTC 60
                                                                                  

consensus_5788#0      --------------CCGCCCACGCGTCCGCGAAGGAATGGACCGCTTTCTCCAACTCACT 46
consensus_5788#1      GTGTACTACCTCGGGCGCC-ACACATCTTCTACAGTTCTAGCCGGTCCAAGCGGGTGAAG 119
                                     **** ** * **  * *  *      *** *     *   * *  

consensus_5788#0      TCCGGCAGTGAGGAAAGATAGAATAGCACGGTTGTAATTTACAAAACCTA-CGGAGTGCG 105
consensus_5788#1      ATCGGTGACGGGCGAGGGTGG--CGGTGCGGTTTCCTTTTCCTCCATGCAGCCACGTGCG 177
                        ***    * *  * * * *    *  *****    *** *   *   * *   *****

consensus_5788#0      GTCGATGAAGTTGGCTCGAAAGTTTGTTTACAAAACTAACGATCATCTATGGACGACACC 165
consensus_5788#1      CAC-ATGGCTTTCGGCAACGCGCGCGTTTAAGATAAAAAGGGTCATTATTGTTAAAGAGA 236
                        * ***   ** *       *   *****  * *  ** * ****   **    * *  

consensus_5788#0      GACGAAGCTATCGTTGGGTGTGCAGGTACGCTCGTATCGTGGAATATCGCTGTTGTGAAA 225
consensus_5788#1      GGCAATACGACGCACGCACGTTTCACCAGGCG---AACACAGGCTGT-GCTGGAGTGGCA 292
                      * * *  * *     *   **      * **    * *   *  * * ****  ***  *

consensus_5788#0      GTATTACTAAATTCCTCTACGTCGGTGTGAATAATTCTACTGCATGTTTGTGTACTG-TG 284
consensus_5788#1      GTGCCGGGTAGTGAGGAAAAGT-AGTGTAACTCGCCGCAGGCTTTAGAAGTAGATCGGCT 351
                      **       * *      * **  **** * *      *     *    **  *  *   

consensus_5788#0      CTGTGATCCAGTGATCCG-CCCGGCCTTGCTGTTTCGTTTCAAGGCAGCAACCGTAGCAG 343
consensus_5788#1      TTGCAGAACGGCGGACCGGTTTGAAGGTAACCGTACTTTGCAAGGCAGCAACCGTAGCAC 411
                       **     * * *  ***    *    *     * * ** ******************* 

consensus_5788#0      CGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTAT 403
consensus_5788#1      GGTAAAGTAGCAGCAAGCAAGCAAGGCACCGGACCGTTTACCAAACCGTGATGGGTCTAT 471
                       ***********************************************************

consensus_5788#0      CACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCG 463
consensus_5788#1      CACGCGTGGAGCGCGTTATCCCCGGGACACGATGGCTGCGCGGCTACACGGGACAGTTCG 531
                      ************************************************************

consensus_5788#0      TGGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGG 523
consensus_5788#1      TCGTGGCCGATCTGATCGCCGGTATCACCGTAGGTTTGACAGTACTTCCCCAAGGGTTGG 591
                      * **********************************************************

consensus_5788#0      CGTATGCGACACTTGCCGGTTTAGAGCCTCAGTACGGTCTATACTCCGCCTTTGTCGGTG 583
consensus_5788#1      CATATGCGACACTTGCCGGTTTAGAGCCACAGT--------------------------- 624
                      * ************************** ****                           

consensus_5788#0      GCGTTGTGTACGCGCTTCTGGGTGGCTGCCGTGAGGTGACGATCGGTCCAACCGCCCTAC 643
consensus_5788#1      ------------------------------------------------------------
                                                                                  

consensus_5788#0      TATCACTCATGACTAGCCGACACACGGGCTACGGAGGTGCGTCCGGTCCACAGCTCGCCA 703
consensus_5788#1      ------------------------------------------------------------
                                                                                  

consensus_5788#0      TACTGCTATGCTTCCTGTCCGGGCGTGGTCGAGCTGCTGATGGCCGTCCTACGGCTTGGT 763
consensus_5788#1      ------------------------------------------------------------
                                                                                  

consensus_5788#0      GCGCTGGTCGATCTCATCTCGCTGCCCCGTTACGGTGGGCTTCACG 809
consensus_5788#1      ----------------------------------------------