These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence [GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCAAAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTAAGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTCCTCCTTTCCCCCACACACAAACACACGTGCGTACCACCCACCGCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCTGTCTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAACAACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACACTCTCTTCCAACCCCTCAATCANAACTACAACAGACGAAACCGTCTTCTTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACACTTTNTAGCCCATTCCCACGTTTTANCCCAGGGTCACATCNACGCACACCTTTAAACCCCGCNTAATTCGCGATACCTTTTAACCCCGGTTCGTANTCCATTTCCAAACTCCACTTTTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATACACTCGGTCGCTATCCTANTC] [+] EMBL BX467179 [GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCAAAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTAAGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTCCTCCTTTCCCCCACACACAAACACACGTGCGTACCACCCACCGCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCTGTCTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAACAACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACACTCTCTTCCAACCCCTCAATCANAACTACAACAGACGAAACCGTCTTCTTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACACTTTNTAGCCCATTCCCACGTTTTANCCCAGGGTCACATCNACGCACACCTTTAAACCCCGCNTAATTCGCGATACCTTTTAACCCCGGTTCGTANTCCATTTCCAAACTCCACTTTTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATACACTCGGTCGCTATCCTANTC] consensusID : consensus_5790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTTTCCCCCCACACAAACACACGTGCGTACCACCCCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACACGTCCATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCTGTCAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTGTTTCGAGATCAGCAAACAACGCACTGGAAGCGAGGCTGTGTGTTTAGTAGGATCCAACCTTCCAAGTACACTCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGACTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCATTTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATACAGCTTAACGCAACGAACGATAATGGCATCGTGGAAAGCAACCCAAAACTTCTTACTCCTCCCTTAGCCTTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTTGGTAAAGGGTGTACTGGGTTGGT] [+] EMBL BM629371 [CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTGTACCTCCTCCTTTCCCCCCACACAAACACACGTGCGTACCACCCCTTGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTCGGACCTTCGGCTGGAGGGAACACGTCCATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAATCCCCGTCAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCTGTCAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTGTTTCGAGATCAGCAAACAACGCACTGGAAGCGAGGCTGTGTGTTTAGTAGGATCCAACCTTCCAAGTACACTCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGACTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCATTTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATACAGCTTAACGCAACGAACGATAATGGCATCGTGGAAAGCAACCCAAAACTTCTTACTCCTCCCTTAGCCTTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTTGGTAAAGGGTGTACTGGGTTGGT] consensusID : consensus_5790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGGATCATCGAATCGGTTGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTGTTCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATGACGACACGGACAAGCACCACATCCAGTTTGTGAAGGCTAACGATGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAACAATAAGCTACCGAAGCCGAAACTTCGCAAACGCTACACCGACGGTGTGGAAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAAGCTGAAGCCCATTCCGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGTGCAGGCACCTCCGGCAAGGACTCCGGCAAGAGCAAGACGACCAAGTCCGCTCCGGCCCCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCCTCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG] [+] EMBL BM607452 [CCGGATCATCGAATCGGTTGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTGTTCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATGACGACACGGACAAGCACCACATCCAGTTTGTGAAGGCTAACGATGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAACAATAAGCTACCGAAGCCGAAACTTCGCAAACGCTACACCGACGGTGTGGAAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAAGCTGAAGCCCATTCCGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGTGCAGGCACCTCCGGCAAGGACTCCGGCAAGAGCAAGACGACCAAGTCCGCTCCGGCCCCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCCTCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG] consensusID : consensus_5790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [GGTGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAATGACGAATGTTTCTACGTTGGACTGGGACACGCCGGTCGTGTAACAAAGCGGGACAAAAAATCCACCGCCAAGGAGGACGACTCGTTCCGGTGTTGCCCGGCGAAGGTCGAGAAGAACACCCGCGTAACGCAGATGGCAGCGCAGAAGATCAGCCGCCGGGACAGTGACGAGGCGGAGAGCCAGTTCGCCTTCCGGCAGAAGAAGCTGTCGGACGTAGCGGACGCGACGGCGGCCGCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGCCAGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGGGGGGCAAAGGTANNAAGGACGCCNAAGACGACGACGGTGACGATGACGATGATGGACTGTTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA] [+] EMBL BX619212 [GGTGAGAAGCTGGCCCACGAGATCGGAATCTTCTCGTTCCCGGCCCTGGTATATTACGAAACCGGTGTCCCGATTATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAAAATGACGAATGTTTCTACGTTGGACTGGGACACGCCGGTCGTGTAACAAAGCGGGACAAAAAATCCACCGCCAAGGAGGACGACTCGTTCCGGTGTTGCCCGGCGAAGGTCGAGAAGAACACCCGCGTAACGCAGATGGCAGCGCAGAAGATCAGCCGCCGGGACAGTGACGAGGCGGAGAGCCAGTTCGCCTTCCGGCAGAAGAAGCTGTCGGACGTAGCGGACGCGACGGCGGCCGCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGCCAGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGGGGGGCAAAGGTANNAAGGACGCCNAAGACGACGACGGTGACGATGACGATGATGGACTGTTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5790#0 GAGGCAAGAATTCGGCACGATTGATGGCGGCAGCAGCAGCAGCACCTCGAAGGGTTGGCA 60 consensus_5790#1 ------------------------------------------------------------ consensus_5790#3 ------------------------------------------------------------ consensus_5790#2 ------------------------------------------------------------ consensus_5790#0 AAGGTAAAAAGGACGCCAAGGACGACGACGGTGACGATGGCGATGATGGACTGTTCGGTA 120 consensus_5790#1 ------------------------------------------------------------ consensus_5790#3 ------------------------------------------------------------ consensus_5790#2 ------------------------------------------------------------ consensus_5790#0 AGCTCGGCTGGTGGTAAGCGGTAACGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTG- 179 consensus_5790#1 --CCGGGCTGGTGGTAAGCGGTAATGGATGCGGTTTGCGTAGTTGGCCAAACTACCCTG- 57 consensus_5790#3 ---------------------------------GGTGAGAAGCTGGCCCACGAGATCGG- 26 consensus_5790#2 ------------------------------------------CCGGATCATCGAATCGGT 18 ** * * * consensus_5790#0 -TACCTCCTCCTCCTCCTTTCCCCCACACACAAAC--ACACGTGCGTACCACCCACCGCT 236 consensus_5790#1 -TACCTCCTCCT-------TTCCCCCCACACAAAC--ACACGTGCGTACCACCC----CT 103 consensus_5790#3 -AATCTTCTCGT--TCCCGGCCCTGGTATATTACG--AAACCGGTGTCCCGATTA----- 76 consensus_5790#2 TGACCGCAAAACGCTGCAAGTGTTGGTAAACGAGGTTGAACATCTGGCTGTACTG----T 74 * * * * * ** * consensus_5790#0 TGCGCCACACAGTCCATCCGATTCGTACCAGCGTTTCGCCCTCGTTC-GGACCTTCGGCT 295 consensus_5790#1 TGCGCCACACAGTCCATCCGATTCGTACCAGCGTTGCGCCCTCGTTC-GGACCTTCGGCT 162 consensus_5790#3 TGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCT--AATTGATCACAA 134 consensus_5790#2 TCTACGATGACGACTGCGAAACCTGCCCCAAAATTCTCGAGAAGCTGGAAACCATCGATG 134 * * * * * * ** consensus_5790#0 GGAGGGAACGCGTTACGTCCTTCACTCTCTGTGTATCTCTGTCGAAAGTAATATCCCCGT 355 consensus_5790#1 GGAGGGAACACGTC-CATCCTTCACCCTGTGTGTATCTCTGTCGAAAGTAA--TCCCCGT 219 consensus_5790#3 AAATGACGAATGTT-TCTACGTTGGACTGGG-ACACGCCGGTCGT--GTAA-----CAAA 185 consensus_5790#2 ACGACACGGACAAGCACCACATCCAGTT-TGTGAAGGCTAACGATGAGAAGCTGGCCCAC 193 * * * * * * * * consensus_5790#0 CAGGGAGGAAACATCCTATTGAGAGCCATGTTACGAACGAAATTATTGTACGTTGCT-GT 414 consensus_5790#1 CAGGGAGGAAACATCCTATTGAGAGCTATGTTGCGAACGAAATTATTGTACGTTGCT-GT 278 consensus_5790#3 GCGGGACAAAAAATCC-----ACCGCCAAG--GAGGACGACTCGTTCCGGTGTTGCC-CG 237 consensus_5790#2 GAGATCGGAATCTTCTCGTTCCCGGCCCTG--GTATATTACG-AAACCGGTGTCCCGATT 250 * ** ** ** * * * ** * consensus_5790#0 CTAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTTCGTTTCGAGACTTANGCAAAC 474 consensus_5790#1 CAAAATTTCACTCAAATCACCCCAAAGAGCTCCAGATTT-GTTTCGAGATC--AGCAAAC 335 consensus_5790#3 GCGAAGGTCGAGAAGAACACCC--GCGTAACGCAGATGGCAGCGCAGAAG---ATCAGCC 292 consensus_5790#2 ATGTATGATGGTAATCTCAAGAACGAAAAACGCATCTTGCAGTGGCTAATTGATCACAAA 310 * * ** ** * * consensus_5790#0 AACGCACTGGAAGCGAGGCTGTGTGTCNCAAACGTAAGGACCCAACTTTCCAAGATACAC 534 consensus_5790#1 AACGCACTGGAAGCGAGGCTGTGTGTTT-----AGTAGGATCCAACCTTCCAAG-TACAC 389 consensus_5790#3 GCCGGGACAGTGACGAGGCGGAGAGCCA-----------GTTCG-CCTTCCGGCAGAAG- 339 consensus_5790#2 AACAATAAGCTACCGAAGCCGAAACTTC---------GCAAACGCTACACCGACGGTGTG 361 * *** ** * * ** consensus_5790#0 TCTCTTCCAACCCCTCAATCANAA--------------------------CTACAACAGA 568 consensus_5790#1 TCTCTTCCAATCCCTCAAAAAAAAGAACCGTCTCTTTCCCTTTTGGATTGTTTCATTGGA 449 consensus_5790#3 --------AAGCTGTCGGACGTAG--------------------------------CGGA 359 consensus_5790#2 G-------AAGATCTCGATCGCGAGGATCGTATCGATAAGAAGCGCTCCGGTTTCAAGAA 414 ** ** * consensus_5790#0 CGAAACCGTCTTC---TTTTTCCCTTTATTGCGGGAAATTCGGGGTTCCAATTGGAACAC 625 consensus_5790#1 CTTTCCTCCCTTTCTGTTTTTTTCTTAACCGTATCGTTCTTACCGTTATCATTCAATCAT 509 consensus_5790#3 CGCGACGGCGGCC--------------GCCGCGAAGGAAAAGAAGGCGGCCCAGGAACGC 405 consensus_5790#2 GCTGAAGCCCATTC--CGAGGCTGGATGCGGTAGAGCAGCCGAAGGCACCCGGTGCAGGT 472 * * consensus_5790#0 TTTN-TAGCCCATTCCCAC-GTTTTANCCCAGGGTCACATCN-ACGCA-CACCTTTAAAC 681 consensus_5790#1 TTGAACTGCTTACTACAACTGTTGTGTTACTGTCTTCTATCTTGCATA-CAGCTTAACGC 568 consensus_5790#3 C--AGCAGCTCGATCTGAAGAAGGCCGGCAAGGGCGGCAGCAGCAGCAGCAAATCGAAGG 463 consensus_5790#2 GCAGGCACCTCCGGC--AAGGACTCCGGCAAGAGCAAGA-CGACCAAGTCCGCTCCGGCC 529 * * * * * * * consensus_5790#0 CCCGCNTAATTCGCGATACCTTTTAACCCCG-GTTCGTANTCCATTTCCAAACTCCACTT 740 consensus_5790#1 AACGAACGATA-ATGGCATCGTGGAAAGCAA-CCCAAAACTTCTTACTCCTCCCTTAGCC 626 consensus_5790#3 GGGGCAAAGGTANNAAGGACGCCNAAGACGA-CGACGGTGACGATGACGATGATGGACTG 522 consensus_5790#2 CCGGCGCCGCCGGCTATCAAGTCCGGCAAGAGTGGCACCAGCAAGGCTGCCCCGTCACCC 589 * * consensus_5790#0 TTTGAAACACCTTCTGGAGTTTAACCTAAACCAACACNCTGCTAGACGCATA---CACTC 797 consensus_5790#1 TTCCAGCAGTGTAGAAAAGAGACGGTTCACTGCGTTTTTTTTTAAACGTGTTTTTCATTT 686 consensus_5790#3 TTCGGTAAGCTCNGCTGGGTGGTAGCNGGTA----------------------------- 553 consensus_5790#2 TCCAAGGGATCCAACGTTGCGAAAAAGACTACCCGTGATG-------------------- 629 * * consensus_5790#0 GGTCGCTATCCTANTC------- 813 consensus_5790#1 GGTAAAGGGTGTACTGGGTTGGT 709 consensus_5790#3 ----------------------- consensus_5790#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||