These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence [CCGCGAAAGCATTCCGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCGAGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCCACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTGCGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCGACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATAATGGGTTCGCCATCGGACCGGACGCTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCTACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATGGAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGCGGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCGGCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACCGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACATCGGAAACGTTC] [+] EMBL BM614018 [CCGCGAAAGCATTCCGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCGAGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCCACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTGCGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCGACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATAATGGGTTCGCCATCGGACCGGACGCTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCTACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATGGAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGCGGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCGGCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACC ] [+] EMBL BM607822 [ ccgACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCCGTGTGCGAACGACGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACCGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACATCGGAAACGTTC] consensusID : consensus_5791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGGAAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGCGGATGCGCAAGGGCCCGTNTCGCAAGAAGCTTAAGAAACTCCGACAAAGAGCTGTCGGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGATATTGGAGGATAGGTAAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGGGGCCACGGTGCCGGACCCGGGCTGGCGCGGCGTTCCGGGCCGGCNGGGTTGGCCCCAGTGCAGCCGAGGGTANTAAC] [+] EMBL BX469797 [GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAGCAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATCCGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGGAAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGCGGATGCGCAAGGGCCCGTNTCGCAAGAAGCTTAAGAAACTCCGACAAAGAGCTGTCGGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGATATTGGAGGATAGGTAAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGGGGCCACGGTGCCGGACCCGGGCTGGCGCGGCGTTCCGGGCCGGCNGGGTTGGCCCCAGTGCAGCCGAGGGTANTAAC] consensusID : consensus_5791#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [TGTGTGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGCGGATGCGCAAGGGCCCGTTCCGCAAGAAGCTTAAAAACTCCGACAAAGAGCTGTCGGCGAACAGCTTCAACTCGGTCNATCTGTCCATCGCCATACAAGAGATTGGAGATAGCAAGATAGAGGTGATCGGGCTGGAGAACTGCCTGCACNTGGGCCAGGTGCGGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGTGCANCGAGGTAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGGGCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGTCGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA] [+] EMBL BX621974 [TGTGTGATGGTGTTTCGCTCGAGTTGGCCAACGGTCCACAGCTGCAGGGCATCGCGTTGCTGAACATCCCCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGCGGATGCGCAAGGGCCCGTTCCGCAAGAAGCTTAAAAACTCCGACAAAGAGCTGTCGGCGAACAGCTTCAACTCGGTCNATCTGTCCATCGCCATACAAGAGATTGGAGATAGCAAGATAGAGGTGATCGGGCTGGAGAACTGCCTGCACNTGGGCCAGGTGCGGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGTGCANCGAGGTAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGGGCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGTCGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5791#1 GGCAAGAATCCGCACGATGTGNATCTATCAGCAGCAGCAGCAGCAGCAACACCATCACAG 60 consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 ----------------------------------------------CCGCGAAAGCATTC 14 consensus_5791#1 CAACGGCAACGCCACGGACAAACCGAGACAGGAGAAGAAAATTATCGACCTACCAAAGTT 120 consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 CGAAGATACTGGACAAGATCAACCGGGCCTCGGTCGTGATGCTGGACCGGTGGAGCATCG 74 consensus_5791#1 GATAAAACCGCAGGTCGG-ATCGGAATTCACCGTGCCGTACAACATTGTCAATAACTACT 179 consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 AGGTCAAGAACAACCCGCTGGCGGCGGAGGAAACACCAACCGCCACCACCATGCCCGGCC 134 consensus_5791#1 TTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACCTGGAGCGGGAGAAAAATC 239 consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 ACAAGGTAACACTGTCCGAGAACGTGCAGAAGGTAATAGAGCTTTCGCATCGCATAATTG 194 consensus_5791#1 CGCACAAATTCAACAGCCGCATGAAGAACAAGCTGTGGTACTTTGAGTACGCCACGTCGG 299 consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 CGGAAAAATCTGTTATCCAAGCGTACGACGAGGAGGAAAATAGTACAAACCGAGCGACCG 254 consensus_5791#1 AAACGTTCGCCGCCTCCTGCAAGAACCTGCACGAGTACCTGGAGATTGTGTGCGATGGT- 358 consensus_5791#2 ------------------------------------------------TGTGTGATGGT- 11 consensus_5791#0 ACGTACCGTTACCGCCCACCGCCAACGGTACGACGCAACGTGCCGCAGTGAGTGACAATA 314 ** * ** * consensus_5791#1 ---GTTTCGC--TCGAGTTGGCCAACGGTCCACA-GCTGCAGGGCATCGC----GTTGCT 408 consensus_5791#2 ---GTTTCGC--TCGAGTTGGCCAACGGTCCACA-GCTGCAGGGCATCGC----GTTGCT 61 consensus_5791#0 ATGGGTTCGCCATCGGACCGGACG-CTGCCGGCACGGCGAGGGTCGCCGCTATGACCGCT 373 * ***** *** ** * * * * ** * * ** * *** *** consensus_5791#1 GAACATCC-CCTACACGCACGGTGGCTCCAATCTGTGGGGCGAACATCTGTCCCAGAAGC 467 consensus_5791#2 GAACATCC-CCTACACGCACGGTGGCTCCAATCTGTGGGGCGAGCATCTGTCCCANAAGC 120 consensus_5791#0 ACGCCCCCACCGACACCGACCACACCGTTCGCGGGCGGTGCCAACGGACCCACCGTAATG 433 * ** ** **** ** * * ** ** * * ** ** consensus_5791#1 GGATGCGCAAGGGCC---CGTNTCGCAAGAAGCTTAAG-AAACTCCGACAAAGAGCTGTC 523 consensus_5791#2 GGATGCGCAAGGGCC---CGTTCCGCAAGAAGCTTAA--AAACTCCGACAAAGAGCTGTC 175 consensus_5791#0 GAAGGTTTCATTGCCGAGCATGCCAATAGAGGCGCGGGGGGGCCGCCCCTGACCAATGGC 493 * * * * *** * * * *** ** * * * * ** * consensus_5791#1 GGACGAACAGCTTCAACTCGGTCGATCTNGTCCATCGCCCGATACAAAGA-TAT-TGGAG 581 consensus_5791#2 GG-CGAACAGCTTCAACTCGGTCNATCTG-TCCATCGCC--ATACAA-GA-GAT-TGGAG 228 consensus_5791#0 GGAGCGACGACGCTAGTGTCGTCGATCGCTGGTGTCGACGAGGACGACGACGACGTGGCG 553 ** ** * * *** *** *** * ** * ** * *** * consensus_5791#1 GATAGGT--AAAAATAANGAGGGTGATCCGGGGCTGGAGAACTGCCTTGCACATTGG-GG 638 consensus_5791#2 -ATAGC----AAGATAGAG---GTGATC--GGGCTGGAGAACTGCCT-GCACNT--G-GG 274 consensus_5791#0 GCTAACACCGGCACTAATGGTAGCGCGCCGCCGGTCGATAACGGCCC-GTGTGCGAACGA 612 ** ** * * * * * * ** *** *** * * consensus_5791#1 CCACGGTGCCGGACCCGGGCTGGCGCGGC--GTTCCGGGCCGGCNGGGTTGGCCCCAGTG 696 consensus_5791#2 CCA-GGTGC-GGACCGGGCTGCGCGCGTCCGGCCGCCGGCTAGCCCAGT--GCANCGAGG 330 consensus_5791#0 CGATGATGCAGCGCAACGTGCCGAGGACGATACCGTGAACAGTTCCTATCAGCAGCA--G 670 * * * *** * * * * * * * ** * * consensus_5791#1 CAGCCGAGGGTANTAAC------------------------------------------- 713 consensus_5791#2 TAATAATGACCACCAANAAAACCTTTCCGATGCAGATCGACGGAGAGCCCTGGATGCAGG 390 consensus_5791#0 CAGCAAC-ACCATCACAGCAACGGCAACGCCACGGACAAACCGAGA-CCGGAGAAGAAAA 728 * * * consensus_5791#1 ------------------------------------------------------------ consensus_5791#2 GCCCTTGCACGATTAAACTCACACACNAAAATCAAGTGCCAATGCTGATGGCGCCCCGGT 450 consensus_5791#0 TTATCGACCTACCAAAGTTGATAAAACCGCAGGTCGGATCGGAATTCACCGTGCCGTACA 788 consensus_5791#1 ------------------------------------------------------------ consensus_5791#2 CGGAGAAGGGNANCGGCTTCTTTAGCTTCCTGAAGA------------------------ 486 consensus_5791#0 ACATTGTCAATAACTACTTTTCCGTCGGTGTGGATGCTGCCATCTGCGTAAAGTTTCACC 848 consensus_5791#1 ------------------------------------------------------------ consensus_5791#2 ------------------------------------------------------------ consensus_5791#0 TGGAGCGGGAGAAAAATCCGCACAAATTTAACAGCCGCATGAAGAACAAGCTGTGGTACT 908 consensus_5791#1 -------------------------- consensus_5791#2 -------------------------- consensus_5791#0 TTGAGTACGCCACATCGGAAACGTTC 934 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||