cluster # 5796

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5796 cluster # 5796 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5796#0 length = 1044 sequences # 3

consensus_5796#1 length = 626 sequences # 1

consensusID : consensus_5796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1044
fasta sequence

                              [CCGAAAAAAAATGCGATTCCACAACACACTCTACTCTTTCGTCATTTCATTCTAGCTTCCACAACAACAGGGCAGCTTATTCCAATCGCTGGAGCTTGGTTTCACGCTGCTCCAGGCAATCTTCCACGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACTGGCAAAAAAGAGGTGCCCTCTGCCACCCAAGCTAACTGCATAAAGATTTGTAGACCCACTCTTGCACCCTTAACTTATTTCCTCTTCACCAACCATGGAGACCGTCGCTTCAACGGAAGCTGGAACGTTGAAAAAGAAACGAAACCGTTCGCACAAAAAACCGAAGCCGGAAGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAACTAAACTCGAAAAGGAAAATAATCCACCAGAACGTGCTGCTACTGGAGCAACGAACCAACGTTCGGCACCTTCCGAAGCACCGGATGCACCGGAGCTTATCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCAAATCGAATCGTTGGAAGCAATAACGGTAGAAGAATTGTTTCCACCGGGAAAGATCTTCTCCGCAGCGACGTCCCAGCGACTTTCAACGAAACTTGAAGTAGTGGTGGAAACTGTTGCAGTCTCCAATAAGCCTACAATCGAAGGTACGAAGTACGCCGGTATAATCGATATTGGTCCGCACGAACTATTTCCGGCGGAGAAAGAATTGCCTGCAGCGATTCAAAACATTACGGCGGAAGACATTTTCCCTGGACCGGAATTGTTTCAATTCAATTTGGGCGGTATTCCGGGCAAGCTAAGTTTCGGTAAATCGGAAACTCCGGTATCAACTACCCCAAAGGGTCCTCTTCCCAGGAAAACAACCGCAACCGATCTGCAAGGTTTGCATGATATTTCTTCTTTCGAGATTTTTCCCAACTGTATGACGGTTGGGTTAAAGGTAGTGTCGGAGAAGGCGAGCAAAACTACTCACCACAACCAAGAGCAATCATCACCTGCGACCAC]

[+] EMBL BM655826             [CCGAAAAAAAATGCGATTCCACAACACACTCTACTCTTTCGTCATTTCATTCTAGCTTCCACAACAACAGGGCAGCTTATTCCAATCGCTGGAGCTTGGTTTCACGCTGCTCCAGGCAATCTTCCACGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACTGGCAAAAAAGAGGTGCCCTCTGCCACCCAAGCTAACTGCATAAAGATTTGTAGACCCACTCTTGCACCCTTAACTTATTTCCTCTTCACCAACCATGGAGACCGTCGCTTCAACGGAAGCTGGAACGTTGAAAAAGAAACGAAACCGTTCGCACAAAAAACCGAAGCCGGAAGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAACTAAACTCGAAAAGGAAAATAATCCACCAGAACGTGCTGCTACTGGAGCAACGAACCAACGTTCGGCACCTTCCGAAGCACCGGATGCACCGGAGCTTATCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCAAATCGAATCGTTGGAAGCAATAACGGTAGAAGAATTGTTTCCACCGGGAAAGATCTTCTCCGCAGCGACGTCCCAGCGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM654182             [                                                ccgaaacCTTCCACAACAACAGGGCAGCTTATTCCAATCGCTGGAGCTTGGTTTCACGCTGCTCCAGGCAATCTTCCACGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACTGGCAAAAAAGAGGTGCCCTCTGCCACCCAAGCTAACTGCATAAAGATTTGTAGACCCACTCTTGCACCCTTAACTTATTTCCTCTTCACCAACCATGGAGACCGTCGCTTCAACGGAAGCTGGAACGTTGAAAAAGAAACGAAACCGTTCGCACAAAAAACCGAAGCCGGAAGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAACTAAACTCGAAAAGGAAAATAATCCACCAGAACGTGCTGCTACTGGAGCAACGAACCAACGTTCGGCACCTTCCGAAGCACCGGATGCACCGGAGCTTATCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCAAATCGAATCGTTGGAAGCAATAACGGTAGAAGAATTGTTTCCACCGGGAAAGATCTTCTCCGCAGCGACGTCCCAGCGACTTTCAACGAAACTTGAAGTAGTGGTGGAAACTGTTGCAGTCTCCAATAAGCCTACAATCGAAGGTACGAAGTACGCCGGTA                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM615949             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgTCCACCGGGAAAGATCTTCTCCGCAGCGACGTCCCAGCGACTTTCAACGAAACTTGAAGTAGTGGTGGAAACTGTTGCAGTCTCCAATAAGCCTACAATCGAAGGTACGAAGTACGCCGGTATAATCGATATTGGTCCGCACGAACTATTTCCGGCGGAGAAAGAATTGCCTGCAGCGATTCAAAACATTACGGCGGAAGACATTTTCCCTGGACCGGAATTGTTTCAATTCAATTTGGGCGGTATTCCGGGCAAGCTAAGTTTCGGTAAATCGGAAACTCCGGTATCAACTACCCCAAAGGGTCCTCTTCCCAGGAAAACAACCGCAACCGATCTGCAAGGTTTGCATGATATTTCTTCTTTCGAGATTTTTCCCAACTGTATGACGGTTGGGTTAAAGGTAGTGTCGGAGAAGGCGAGCAAAACTACTCACCACAACCAAGAGCAATCATCACCTGCGACCAC]




>consensus_5796#0
CCGAAAAAAAATGCGATTCCACAACACACTCTACTCTTTCGTCATTTCATTCTAGCTTCC
ACAACAACAGGGCAGCTTATTCCAATCGCTGGAGCTTGGTTTCACGCTGCTCCAGGCAAT
CTTCCACGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACTGGCAAAAAAGAGGTG
CCCTCTGCCACCCAAGCTAACTGCATAAAGATTTGTAGACCCACTCTTGCACCCTTAACT
TATTTCCTCTTCACCAACCATGGAGACCGTCGCTTCAACGGAAGCTGGAACGTTGAAAAA
GAAACGAAACCGTTCGCACAAAAAACCGAAGCCGGAAGCAGCCACCGTTAACTGCGAGTC
GGCCAATATCGCCCAACAGCAAACTAAACTCGAAAAGGAAAATAATCCACCAGAACGTGC
TGCTACTGGAGCAACGAACCAACGTTCGGCACCTTCCGAAGCACCGGATGCACCGGAGCT
TATCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCA
AATCGAATCGTTGGAAGCAATAACGGTAGAAGAATTGTTTCCACCGGGAAAGATCTTCTC
CGCAGCGACGTCCCAGCGACTTTCAACGAAACTTGAAGTAGTGGTGGAAACTGTTGCAGT
CTCCAATAAGCCTACAATCGAAGGTACGAAGTACGCCGGTATAATCGATATTGGTCCGCA
CGAACTATTTCCGGCGGAGAAAGAATTGCCTGCAGCGATTCAAAACATTACGGCGGAAGA
CATTTTCCCTGGACCGGAATTGTTTCAATTCAATTTGGGCGGTATTCCGGGCAAGCTAAG
TTTCGGTAAATCGGAAACTCCGGTATCAACTACCCCAAAGGGTCCTCTTCCCAGGAAAAC
AACCGCAACCGATCTGCAAGGTTTGCATGATATTTCTTCTTTCGAGATTTTTCCCAACTG
TATGACGGTTGGGTTAAAGGTAGTGTCGGAGAAGGCGAGCAAAACTACTCACCACAACCA
AGAGCAATCATCACCTGCGACCAC

consensusID : consensus_5796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGGGCAATCTTCCCCGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACAGGCAAAAAAGAGGTGCCCTCTGCCACCCAAGAAACGAAACCGTTCGCACAAAAAACCGAAACCGGAAGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAGCTAAACTCGAAAAGGAAAATAATCCACCAGCACGAGCTGCTACTGGAGCAACGAATCAACGCCCGGCACCACCCGTAGCACCGGAAGCACCGGAGCTTACCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCAAATCGAGTTGGAAGCAATAACGGTGGAGGAATTGTTTCCACCGGGGAAGATCTTCTCCGCAGCGACGTCCCAGCGACTGCCAACGAAGCTTGAAGCAGTGGTGGAAACTGTTGCAAGCTCTAATAAGCCTACAACCGTCGGTACGAAGTACGCCGGTGTAATCGATATTGGCCCGCACGAACTATTTCCGGCGGAGAAAGAGGTGCCTGCTGCGATTCAAAACATTACGGCGGAAGACATTTTCCCTGGACCGGAATTGTTTCAATTCAGTGTGGGCGGTATTCCGGGCAAGCTAAGTTTCG]

[+] EMBL BM608582             [CCGGGCAATCTTCCCCGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACAGGCAAAAAAGAGGTGCCCTCTGCCACCCAAGAAACGAAACCGTTCGCACAAAAAACCGAAACCGGAAGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAGCTAAACTCGAAAAGGAAAATAATCCACCAGCACGAGCTGCTACTGGAGCAACGAATCAACGCCCGGCACCACCCGTAGCACCGGAAGCACCGGAGCTTACCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCAAATCGAGTTGGAAGCAATAACGGTGGAGGAATTGTTTCCACCGGGGAAGATCTTCTCCGCAGCGACGTCCCAGCGACTGCCAACGAAGCTTGAAGCAGTGGTGGAAACTGTTGCAAGCTCTAATAAGCCTACAACCGTCGGTACGAAGTACGCCGGTGTAATCGATATTGGCCCGCACGAACTATTTCCGGCGGAGAAAGAGGTGCCTGCTGCGATTCAAAACATTACGGCGGAAGACATTTTCCCTGGACCGGAATTGTTTCAATTCAGTGTGGGCGGTATTCCGGGCAAGCTAAGTTTCG]




>consensus_5796#1
CCGGGCAATCTTCCCCGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACAGGCAAA
AAAGAGGTGCCCTCTGCCACCCAAGAAACGAAACCGTTCGCACAAAAAACCGAAACCGGA
AGCAGCCACCGTTAACTGCGAGTCGGCCAATATCGCCCAACAGCAAGCTAAACTCGAAAA
GGAAAATAATCCACCAGCACGAGCTGCTACTGGAGCAACGAATCAACGCCCGGCACCACC
CGTAGCACCGGAAGCACCGGAGCTTACCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCC
AAAAAGCGACAAAAAGGAAGAGCAAATCGAGTTGGAAGCAATAACGGTGGAGGAATTGTT
TCCACCGGGGAAGATCTTCTCCGCAGCGACGTCCCAGCGACTGCCAACGAAGCTTGAAGC
AGTGGTGGAAACTGTTGCAAGCTCTAATAAGCCTACAACCGTCGGTACGAAGTACGCCGG
TGTAATCGATATTGGCCCGCACGAACTATTTCCGGCGGAGAAAGAGGTGCCTGCTGCGAT
TCAAAACATTACGGCGGAAGACATTTTCCCTGGACCGGAATTGTTTCAATTCAGTGTGGG
CGGTATTCCGGGCAAGCTAAGTTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5796#0      CCGAAAAAAAATGCGATTCCACAACACACTCTACTCTTTCGTCATTTCATTCTAGCTTCC 60
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      ACAACAACAGGGCAGCTTATTCCAATCGCTGGAGCTTGGTTTCACGCTGCTCCAGGCAAT 120
consensus_5796#1      ---------------------------------------------------CCGGGCAAT 9
                                                                         ** ******

consensus_5796#0      CTTCCACGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACTGGCAAAAAAGAGGTG 180
consensus_5796#1      CTTCCCCGGGTGGTGAAAGAAGGATTCCTGCTACGTTGCAAAACAGGCAAAAAAGAGGTG 69
                      ***** ************************************** ***************

consensus_5796#0      CCCTCTGCCACCCAAGCTAACTGCATAAAGATTTGTAGACCCACTCTTGCACCCTTAACT 240
consensus_5796#1      CCCTCTGCCACCCAAG-------------------------------------------- 85
                      ****************                                            

consensus_5796#0      TATTTCCTCTTCACCAACCATGGAGACCGTCGCTTCAACGGAAGCTGGAACGTTGAAAAA 300
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      GAAACGAAACCGTTCGCACAAAAAACCGAAGCCGGAAGCAGCCACCGTTAACTGCGAGTC 360
consensus_5796#1      -AAACGAAACCGTTCGCACAAAAAACCGAAACCGGAAGCAGCCACCGTTAACTGCGAGTC 144
                       ***************************** *****************************

consensus_5796#0      GGCCAATATCGCCCAACAGCAAACTAAACTCGAAAAGGAAAATAATCCACCAGAACGTGC 420
consensus_5796#1      GGCCAATATCGCCCAACAGCAAGCTAAACTCGAAAAGGAAAATAATCCACCAGCACGAGC 204
                      ********************** ****************************** *** **

consensus_5796#0      TGCTACTGGAGCAACGAACCAACGTTCGGCACCTTCCGAAGCACCGGATGCACCGGAGCT 480
consensus_5796#1      TGCTACTGGAGCAACGAATCAACGCCCGGCACCACCCGTAGCACCGGAAGCACCGGAGCT 264
                      ****************** *****  *******  *** ********* ***********

consensus_5796#0      TATCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCA 540
consensus_5796#1      TACCCGCAAACCAAGCCGACGTCGTAAGCGAAAGCCAAAAAGCGACAAAAAGGAAGAGCA 324
                      ** *********************************************************

consensus_5796#0      AATCGAATCGTTGGAAGCAATAACGGTAGAAGAATTGTTTCCACCGGGAAAGATCTTCTC 600
consensus_5796#1      AATCGA---GTTGGAAGCAATAACGGTGGAGGAATTGTTTCCACCGGGGAAGATCTTCTC 381
                      ******   ****************** ** ***************** ***********

consensus_5796#0      CGCAGCGACGTCCCAGCGACTTTCAACGAAACTTGAAGTAGTGGTGGAAACTGTTGCAGT 660
consensus_5796#1      CGCAGCGACGTCCCAGCGACTGCCAACGAAGCTTGAAGCAGTGGTGGAAACTGTTGCAAG 441
                      *********************  ******* ******* *******************  

consensus_5796#0      CTCCAATAAGCCTACAATCGAAGGTACGAAGTACGCCGGTATAATCGATATTGGTCCGCA 720
consensus_5796#1      CTCTAATAAGCCTACAACCGTCGGTACGAAGTACGCCGGTGTAATCGATATTGGCCCGCA 501
                      *** ************* **  ****************** ************* *****

consensus_5796#0      CGAACTATTTCCGGCGGAGAAAGAATTGCCTGCAGCGATTCAAAACATTACGGCGGAAGA 780
consensus_5796#1      CGAACTATTTCCGGCGGAGAAAGAGGTGCCTGCTGCGATTCAAAACATTACGGCGGAAGA 561
                      ************************  ******* **************************

consensus_5796#0      CATTTTCCCTGGACCGGAATTGTTTCAATTCAATTTGGGCGGTATTCCGGGCAAGCTAAG 840
consensus_5796#1      CATTTTCCCTGGACCGGAATTGTTTCAATTCAGTGTGGGCGGTATTCCGGGCAAGCTAAG 621
                      ******************************** * *************************

consensus_5796#0      TTTCGGTAAATCGGAAACTCCGGTATCAACTACCCCAAAGGGTCCTCTTCCCAGGAAAAC 900
consensus_5796#1      TTTCG------------------------------------------------------- 626
                      *****                                                       

consensus_5796#0      AACCGCAACCGATCTGCAAGGTTTGCATGATATTTCTTCTTTCGAGATTTTTCCCAACTG 960
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      TATGACGGTTGGGTTAAAGGTAGTGTCGGAGAAGGCGAGCAAAACTACTCACCACAACCA 1020
consensus_5796#1      ------------------------------------------------------------
                                                                                  

consensus_5796#0      AGAGCAATCATCACCTGCGACCAC 1044
consensus_5796#1      ------------------------