These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 850 fasta sequence [GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGTCGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGG] [+] EMBL BX624861 [GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGTCGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTT ] [+] EMBL BX626538 [ CATCCGCGACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTT ] [+] EMBL BM610247 [ ccgTGCCAATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTATGCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCCACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCACACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACCACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTTGGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATATTGAAAAAGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCAGGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTATGGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGG] consensusID : consensus_5804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TAACAACAAAAGGGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTAAATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAAGGACGACGAGAGTGAAAATGATAAACCTAAACGCGTTTACAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATGCGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA] [+] EMBL BM629882 [TAACAACAAAAGGGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTAAATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAAGGACGACGAGAGTGAAAATGATAAACCTAAACGCGTTTACAATTATAAATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTCTATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTTCTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATGCGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5804#0 GCCCGTTAGTAACACTGGAACTCTAGGGAAGGCATCACGCGAGTACCGGACACCACCAGT 60 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 CGTTGTGCCTCCTCAAGTACCCTCGCATTATGCGCCCAACTATCCGGTTGGCCATCCGCG 120 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 ACGAACGTCCAGCGTCGGTGGAGTTGAACGGGGCCCAGGCTATAGTGCTCTACCAATGCC 180 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 AATGCCCCCAAGTCAGGTGGTAATGCACCATCCGCCGCAAATCGGCATGGTACATCCTAT 240 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 GCAGTCTGGACCTGTCATGCAGCATCAATCAACTTTTGAGGAGCGTAACAGTATGCCGCC 300 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 ACCCCCATCACCACTCACCGTCACTCATGAACAGCCAGACCATAGTCACATCGGTATGCA 360 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 CACACTAAGCCGCAATATGCCTCGTCCTGGGTCACAATCACCACCCCTACCGCCGCCACC 420 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 ACCGCCGGAGGAATCGGATCATGCTGATTTTGGTCGACCACGTAATACCCATAATAGCTT 480 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 GGTGGCACCGATCGTACCAGATGATCAAAATCTCCCAGGTTGGGTCCCAAAAAATTATAT 540 consensus_5804#1 ------------------------------------------------TAACAACAAAAG 12 ** ** * * consensus_5804#0 TGAAAAGGTGGTTGCTATCTACGATTATTACGCCGACAAGGACGACGAGCTAAGTTTTCA 600 consensus_5804#1 GGGGTTGTTTGTTTTTTTTTTTTTTGGTTTCGTTCGTGTGTTTTGTGTGCGTTTTTTTTA 72 * * * *** * * * * ** ** * * ** **** * consensus_5804#0 GGAAAGTTCCGTGTTGTATGTGCTTAAGAAAAATGATGATGGATGGTGGGAGGGCGTTAT 660 consensus_5804#1 AATGATGCCCTTAAAAAGGGAACTCAAAAAAAAAGAA---GGACGACGAGAG-------T 122 * ** * * ** ** ***** ** *** * * *** * consensus_5804#0 GGACGGGGTGACCGGACTTTTTCCGGGCAATTATGTAGAACCTTGCGTTTAAAATTATAA 720 consensus_5804#1 GAAAATGATAA---------------------ACCTAAA----CGCGTTTACAATTATAA 157 * * * * * * ** * ******* ******** consensus_5804#0 ATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTC 780 consensus_5804#1 ATTTGCGAGCTAAATACTGCAAACAACGTTTGCTTGAACAGCGGTTTAAGATATGGTTTC 217 ************************************************************ consensus_5804#0 TATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTT 840 consensus_5804#1 TATTGCTTATATTTTATTTTAGTTAGTACCACATTTTTCATGTTATTATTTAACCGCCTT 277 ************************************************************ consensus_5804#0 CTCGGGTAGG-------------------------------------------------- 850 consensus_5804#1 CTCGGGTAGGCCTAATATATATGTTTCTGGAATATATATGTATGGGCCGTCCCGAGTATG 337 ********** consensus_5804#0 ------------------------------------------------------------ consensus_5804#1 CGGTTGTATGCTTACGTATAATTTTTCTATTGTAAACAAGATGGCTTTATGTAAACCGAA 397 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||