These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 829 fasta sequence [CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACA-AAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAA-AAGCGGAAGATTGGAGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCTTTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACAT----ATATGTAGTGCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGGAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG] [+] EMBL BM610418 [CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACACAAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAACAAGCGGAAGATTGGAGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCTTTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACATACAAATATGTAGTGCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGG ] [+] EMBL BX608445 [ aaCTCCACACCAACCTCA AAAACGAACGACGAAAATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCGAAA AAGCGGAAGATTGGAGCAAAAAGGCAGCAGGGACAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGTTGGTTCATTTACTGGGAATGCAATTTTGCAATCCTCTGTGTACAGTACATCCTACACAT ATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGC ] [+] EMBL BM638209 [ ccggaAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCG TGCA CTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG] consensusID : consensus_5806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGCCCACGCGTCCGGTACATCCTACACATATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT] [+] EMBL BM635816 [CCGCCCACGCGTCCGGTACATCCTACACATATATGTAGTGCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGAGGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTAATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAACGCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAGGCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAATTAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCACTAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGATGAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCGGCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGCCTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5806#0 CCGCCCACGCGTCCGCTATTCTGCAAAACCTCCAAACAAACCACAAAAACGAACGACGAA 60 consensus_5806#1 ------------------------------------------------------------ consensus_5806#0 AATCAATGTGATATAACAAATTGCGCCGAGCGCAATGCTAGCAAAAAAGCGGAAGATTGG 120 consensus_5806#1 ------------------------------------------------------------ consensus_5806#0 AGCAAAAAGGCAGCAGGTAAAGCAGGTCCCGTTCGTTCACGGGTGTAGTGGATGGTTCCT 180 consensus_5806#1 ------------------------------------------------------------ consensus_5806#0 TTGCTGGGAATGCAGTTTTGCAATCCTCTGTGTACAGTACATCCTACACATATATGTAGT 240 consensus_5806#1 --------------------CCGCCCAC-GCGTCCGGTACATCCTACACATATATGTAGT 39 * ** * * ** * ************************ consensus_5806#0 GCATTTTAGCGGGTTTTTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGA 300 consensus_5806#1 GCATTTTAGCGGGTTTCTTTTCGATTCATTTAAGCGTAGGTGTGTATAGGCTAGACCCGA 99 **************** ******************************************* consensus_5806#0 GGCTTCTAATTTGTGTGTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTA 360 consensus_5806#1 GGCTTCTAATTTGTGTTTTTGTGTGTGTCAGGACGTTTTCTTTTTTATATAAAATCTCTA 159 **************** ******************************************* consensus_5806#0 ATTCGATTTTTGGAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAAC 420 consensus_5806#1 ATTCGATTTTTGAAAAAAGAAAAAAAAAGATTAAGCGTCAGCTAATTTGCCAAAATGAAC 219 ************ *********************************************** consensus_5806#0 GCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAG 480 consensus_5806#1 GCATCTTCGCTTATCTGTTACCATTTGTATATAGGAGCATTGTGTTGCGTTTCGAGCCAG 279 ************************************************************ consensus_5806#0 GCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAAT 540 consensus_5806#1 GCGAGCCAATCTCATCGTGCGCTGCACCTTGCGCTGCCGATACGAGAAGATAGCAATAAT 339 ************************************************************ consensus_5806#0 TAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCAC 600 consensus_5806#1 TAGTCTAAACCAAAATGAAACATTCGTGCGGTGATGATCCTAAGAGTTGAACGGCGCCAC 399 ************************************************************ consensus_5806#0 TAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGAT 660 consensus_5806#1 TAGACACAGGATTGGTGAATGTTTTCATTTGTGGTCCCTCTTTTTGTTTTAACTCGAGAT 459 ************************************************************ consensus_5806#0 GAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCG 720 consensus_5806#1 GAGCTGTGCACGTTCCAACTTTGAAGCTGTTCCCGCTTCAGCCCAGTCGTACGCAGCCCG 519 ************************************************************ consensus_5806#0 GCACTCGTTTACCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGC 780 consensus_5806#1 GCACTCGTTTTCCGAGAAACTCTATAGACTGTCGCTCGTAAAAGCTCGTGTTGTTTGTGC 579 ********** ************************************************* consensus_5806#0 CTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCG---------- 829 consensus_5806#1 CTTCGTAACTGCCTTTGTATAGTGAAAGCGTTTATTGTGTAAGAAACCGGAAACGAAAT 638 ************************************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||