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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence
[CCGAGAAATTGTCCCACAATTACGAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCTCAAACTCGGGTTTGCGCAGTGAGAATGTTTTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCAACCCTCGACCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAAACCAAATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATATTAATGGGCGCTCGCAGAAAAAAAAACAATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATATAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGGTTGGAAAGTATTACGACCTATGGAGGGGAGGGAA-GAGTAGAAAACGGAGCTAGAAACCTACAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATTAAAAAAAAAAC]
[+] EMBL BM611325 [CCGAGAAATTGTCCCACAATTACGAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCTCAAACTCGGGTTTGCGCAGTGAGAATGTTTTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCAACCCTCGACCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAAACCAAATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATATTAATGGGCGCTCGCAGAAAAAAAAACAATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATATAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGGTTGGAAAGTATTACGACCTATGGAGGGGAGGGAA ]
[+] EMBL BX618958 [ cAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTATTTTAATGGTTTCCCCAACGACGGGGCACT GTT GAAAGTATTACGACCTAT GAAGGGAGAAAAGGAGTAGAAAACGGAGCTAGAAACCTACAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATTAAAAAAAAAAC]
consensusID : consensus_5813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCAACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGGAGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAAAAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACTATGGA]
[+] EMBL BM635183 [CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCAACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGGAGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGATTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAAAAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACTATGGA]
consensusID : consensus_5813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAAGGAATTGTCAAACAACTATGAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCCCAAACTCGGGTTTGCGCAGTGAGAATGTTTAATAACATTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCACCCTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAAACCAAAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGTGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG]
[+] EMBL BM619794 [CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAAGGAATTGTCAAACAACTATGAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCAAGAACACGTAACTCTAAGCATATTGAGTGTTATTCGTTGTCCAGCCAGTAAGAACAACTTTAAAGTCAAGCGGCCCCAAACTCGGGTTTGCGCAGTGAGAATGTTTAATAACATTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATCTCGCCCTAATAATCTCACCCTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAAACCAAAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAGGTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGTGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGCTCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5813#0 ------------------------------------CCGA-GAAATTGTCCCACAATTAC 23
consensus_5813#2 CCGCAACATATGGAGTACACTTCCCATAAGAAAGAGTCAA-GGAATTGTCAAACAACTAT 59
consensus_5813#1 ---------CCGCTTTTTTTTTGATCTTTGAGCGAGCGAACGTAATTTGGAAGTTAGTAG 51
* * **** * **
consensus_5813#0 GAGAACCCCTGGAAAACCCTGTAAGTGTACAGTGACAGGGACAGTAAGTTTCTGTACCCA 83
consensus_5813#2 GAGAACACCTGGAAAATCCTGTAAATGTACAGTGACAGGGACAGTAAGTTTCTGTACCCA 119
consensus_5813#1 GTGTGGCCGGATGATGTGCAATTAGTAAGCAGTAAGGGTGCATGTGTGTGTGTGTGAGTA 111
* * * * * * * * **** * * * ** ** * *** *
consensus_5813#0 AGAACAC-GTAACTCTAAGC-ATATTGAGTGTTATTC-GTTGTCCAGCCAGTAAGAACAA 140
consensus_5813#2 AGAACAC-GTAACTCTAAGC-ATATTGAGTGTTATTC-GTTGTCCAGCCAGTAAGAACAA 176
consensus_5813#1 GGAAAACCATAAATCCAAACGATGTTTGCCAGTGCCGAGTTGTGTAATAATAATGGGCGC 171
*** ** *** ** ** * ** ** * ***** * * * * *
consensus_5813#0 CTTTAAAGTCAAGCGGCCTCAAACTCGGGT----TTGCGCAGTGAGAATGTTT------- 189
consensus_5813#2 CTTTAAAGTCAAGCGGCCCCAAACTCGGGT----TTGCGCAGTGAGAATGTTTAATAACA 232
consensus_5813#1 TCGCAAAAACAAACAATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATG 231
*** *** * *** * ** * ** * ** *
consensus_5813#0 -------------TTTTCGTTTTCTAGATGAGTGAATC--TCGCCCTAATAATCTCAACC 234
consensus_5813#2 TTTTGTGTTTTCGTTTTCGTTTTCTAGATGAGTGAATC--TCGCCCTAATAATCTCA-CC 289
consensus_5813#1 AAATGAATAAAGTATAAAGATTTCCACCCCAAACCTCCCGTTTTTTTAATGGTTTCCCCA 291
* * **** * * * * **** * ** *
consensus_5813#0 CTCGA--CCCACAAAAGTCAACGCTTAGTTTCATGCATATCTCATTCCATTCCGTTCCAA 292
consensus_5813#2 CTCGAAACCCACAAATGACAACGCTTAGTTTTATGCATATCTCATTCCATTCCGTTCCAA 349
consensus_5813#1 ACGACGGGGTACTGTTGAAAGTATTACGACCTATGGAGGGAGAAAAGGAGTAGAAAACGG 351
** * * * * *** * * * * *
consensus_5813#0 ACCA---AATGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGGGTAAG 349
consensus_5813#2 ACCA---AAAGTCCAACCACAAGAAGAGTAAAGCGATGATGGGTGGTAAGATAGAGTAAG 406
consensus_5813#1 AGGAGCTAGAAACCTACGAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCT 411
* * * ** ** * ** ** * * * * * *** ** ** *
consensus_5813#0 ATCTTTGAGCGAGCGAACGTAATTTGGAA-GTTAGTAGGTGTGGCCGGATGATGTGCAAT 408
consensus_5813#2 ATCTTTGAGCGAGCGAACGTAATTTGGAA-GTTAGTAGGTGTGGCCGGATGATGTGCAAT 465
consensus_5813#1 GTAGATGGGATAAATCATAGAAAACGGAACGGGAGAAAGGAGAAACACAAAACTGGTTGA 471
* ** * * * ** **** * ** * * * * * *
consensus_5813#0 TAGTAAGCAGTAAG--GGTGCATGTGTGTGTGTGTGAGTAGAAAAACCATAAATCCAAAC 466
consensus_5813#2 TAGTAAGCAGTAAG--GGTG--TGCGTGTGTGTGTGAGTAGGAAAACCATAAATCCAAAC 521
consensus_5813#1 TTATAATGAGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGT 531
* *** **** * ** *** ** **** *** **
consensus_5813#0 GATGTTTGCCAGTGCCGAGTT----GTGTAATATTAATGGGCGCTCGCAGAAAAAAAAAC 522
consensus_5813#2 GATGTTTGCCAGTGCCGAGTT----GTGTAATAATAATGGGCGCTCGCA--AAAACAAAC 575
consensus_5813#1 AATAAAAGATAAAAAAAAAACAGAAGAAGAGAAAAAACGAACAAACACACAAACACCAAA 591
** * * * * * * ** * * * ** ** * **
consensus_5813#0 AATTCGAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAAAAAAATA 582
consensus_5813#2 AATTCAAAAAAGAATTCTTCTTCCACATTTGTAACACCTATAGATGAAATGAATAAAG-- 633
consensus_5813#1 AAGAAAATAACAAAACAAAAAACAATACGAATAAAACACACTGGAAAAGAAAACACTACT 651
** * ** ** * * * *** ** * * ** ** *
consensus_5813#0 TAAAGATTTCCACCCTAGACCTCCCGTTTTTTAATGGTTTCCCCAACGACGGGGCACTGG 642
consensus_5813#2 ------------------------------------------------------------
consensus_5813#1 ATGGA------------------------------------------------------- 656
consensus_5813#0 TTGGAAAGTATTACGACCTATGGAGGGGAGGGAAGAGTAGAAAACGGAGCTAGAAACCTA 702
consensus_5813#2 ------------------------------------------------------------
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 CAAAACAAAAAAAAAAACAAGTACACTAAATTTGGTAGTGGGACCCTCTTCTGTAGATGG 762
consensus_5813#2 ------------------------------------------------------------
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 GATAAATCATAGAAAACGGAACGGAAGATAGGAGAAACACAAAACTGGTTGATTATAATG 822
consensus_5813#2 ------------------------------------------------------------
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 AGTAGATTAACGTAAAATTGCAAAACTGAACAGAAAAATACAAAAGACATGTAATAAAAG 882
consensus_5813#2 ------------------------------------------------------------
consensus_5813#1 ------------------------------------------------------------
consensus_5813#0 ATTAAAAAAAAAAC 896
consensus_5813#2 --------------
consensus_5813#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||