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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1292 fasta sequence
[ATTGAAACTAAGCTACTAGTTTGCATTACAGTAGTGATCATCGAGTGGGGTAGCATGCCTTTTGTGAAAAACAGAATTAAAAGTGTAGAGCTGCGATCAGTTTTAAAACAAAGCGTTATAACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCCTTTTCGCGATCAGTGGGAAATCTAACAATAAAAGTCACCAAAAAAAACAAGCGTAATCAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGATCACCATTGCGGTGATCGCTGTTTCGCAATAGAAACGATTCCCATCGAAATGTCCAACGAGCCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGGCCGTTCTTCAGCACAATCACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTTCGCGCCAAAGTGCGGCTCGTCCAACCGTTCACGCACGTACGCAACCGCCTCCTCGTTGGTGAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCGGTGATCGACTAGATCGAAGGAAAGCACGTCCGGGTT-GGCAATGACCAGGTTTTTCTCCTTCAGCGGATAGTCGCCCGGGGCGCGGGACGTCGCCAGTAATGCCCGCCACCCGGCCACACGGCCTTTGAACGCGATGAAACCGCCGGCGTCCGCGATGCGCTTCTGCTCCCGCACCTGCTGCGGCTTGTGGTCGAACGACAGCGGGATCCGCGTTACCCCTTGAAGTCGCACATGACGCCGCGCGAATCGCCCACATTGGCCACTATCAGCTTGGTGCGGTGTATGACCGCAATCAGGGGCGGTCGTACCGGCAAAGTCCGACATTTTCTTCGCCGCCTCCACCAGATCGTAATCGGCCGCCAGCACCTCGTCGGTAATGATCTTGCCAAAGTTGATGCTGCCATTCTGCACGTAGCAGCGGGCGTCGTACGTTTTCGGCTTTGCCGGCACGGACTCACCACCGCCCGACGTCCCGTTCAGCAGGTTCTTCTTCACCTGCTGCCGGGCCGGCGACTGATTGCCCATGTACTTGCTCAGCAAATCGTTCTCCAGCATCTGATTGTTGTTGGCTGCTGCTCCTCCACCACCACCGTTCGCTGCACCATTGTTGCCCGTTCCGACCGTGTCCTCGGTTTTGGATTTGCGAAAGCTCTGTCGCCGCTGGACCGCACCCGACGGGTCACTATTTCCATTGTGCCGGCTCACCGG]
[-] EMBL BM652319 [ATTGAAACTAAGCTACTAGTTTGCATTACAGTAGTGATCATCGAGTGGGGTAGCATGCCTTTTGTGAAAAACAGAATTAAAAGTGTAGAGCTGCGATCAGTTTTAAAACAAAGCGTTATAACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCCTTTTCGCGATCAGTGGGAAATCTAACAATAAAAGTCACCAAAAAAAACAAGCGTAATCAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGATCACCATTGCGGTGATCGCTGTTTCGCAATAGAAACGATTCCCATCGAAATGTCCAACGAGCCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGGCCGTTCTTCAGCACAATCACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTTCGCGCCAAAGTGCGGCTCGTCCAACCGTTCACGCACGTACGCAACCGCCTCCTCGTTGGTGAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCGGTGATCGACTAGATCGAAGGAAAGCACGTCCGGGTT GGCAATGACCAGGTTTTTCTCCTTCAGCGGATAGTCGCCCGG ]
[-] EMBL BM657125 [ AGGAAAGCACGTCCGGGTTGGGCAATGACCAGGTTTTTCTCCTTCAGCGGATAGTCGCCGAGGGCGCGGGACGTCGCCAGTAATGCCCGCCACCCGGCCACACGGCCTTTGAACGCGATGAAACCGCCGGCGTCCGCGATGCGCTTCTGCTCCCGCACCTGCTGCGGCTTGTGGTCGAACGACAGCGGGATCCGCGTTACCCCTTGAAGTCGCACATGACGCCGCGCGAATCGCCCACATTGGCCACTATCAGCTTGGTGCGGTGTATGACCGCAATCAGGGGCGGTCGTACCGGCAAAGTCCGACATTTTCTTCGCCGCCTCCACCAGATCGTAATCGGCCGCCAGCACCTCGTCGGTAATGATCTTGCCAAAGTTGATGCTGCCATTCTGCACGTAGCAGCGGGCGTCGTACGTTTTCGGCTTTGCCGGCACGGACTCACCACCGCCCGACGTCCCGTTCAGCAGGTTCTTCTTCACCTGCTGCCGGGCCGGCGACTGATTGCCCATGTACTTGCTCAGCAAATCGTTCTCCAGCATCTGATTGTTGTTGGCTGCTGCTCCTCCACCACCACCGTTCGCTGCACCATTGTTGCCCGTTCCGACCGTGTCCTCGGTTTTGGATTTGCGAAAGCTCTGTCGCCGCTGGACCGCACCCGACGGGTCACTATTTCCATTGTGCCGG ]
[-] EMBL BM611383 [ CTGCTGCGGCTTGTGGTCGAACGACAGCGGGAT CGCGTTA CCCTTGAAGTCGCACATGACGCCGCGCGAATCGCCCACATTGGCCACTATCAGCTTGGTGCGGTGTATGACCGCAATCA GGGCGGTCGTACCGGCAAAGTCCGACATTTTCTTCGCCGCCTCCACCAGATCGTAATCGGCCGCCAGCACCTCGTCGGTAATGATCTTGCCAAAGTTGATGCTGCCATTCTGCACGTAGCAGCGGGCGTCGTACGTTTTCGGCTTTGCCGGCACGGACTCACCACCGCCCGACGTCCCGTTCAGCAGGTTCTTCTTCACCTGCTGCCGGGCCGGCGACTGATTGCCCATGTACTTGCTCAGCAAATCGTTCTCCAGCATCTGATTGTTGTTGGCTGCTGCTCCTCCACCACCACCGTTCGCTGCACCATTGTTGCCCGTTCCGACCGTGTCCTCGGTTTTGGATTTGCGAAAGCTCTGTCGCCGCTGGACCGCACCCGACGGGTCACTATTTCCATTGTGCGCGCTCACCGG]
consensusID : consensus_5814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence
[AGGCAAGAATCCGCACGAGGGTGGGATAGCATGTCTTTTGTTCAAAAGAGAATTAAAAGTGTAGAGCTACGATCAGTTTTAAAACAAAGCGTTATAACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCCTTTTTGCGATCAGTGTGGGAAATCTAACAATAAAAGTCAGCAAAAAAAAACAAGCGTAATCAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGATCACCATTGCGGTGATCGCTGTTTCGCAACGGAGACGATTGCCCTCGAAATGTCCAACGAGCCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGACCGTTCTTCAGCACAATCACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTTCGCGCCAAAGTGCGGCTCGTCCAACCGTTCGCGCACGTACGCGACCGCCTCCTCGTTGGTGAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCTACAAAAAACAGGGAAATATGTTTTAGCAACTCTTGCACGAGTAACAATTGCTCTCTCACACACACACACTTACCGGTGGTCGACTAGATCGAAGGAAAGCACGTCCGGGTTGGCAATGACCAGGTTTGTTCTCCTTCAGCGGGATAGTCGCCGAGGGCGCGGGGACGTCAGCCAGTATGCCCGGCCAGCACGGCCACAACGGCCCCTTGAAACGGCGATGAAAACCGGNCAGGACGTCCGGGGCAATGCGCTTCATGGTNCAGGGACTTGTTGACNCGGATGNGGAATCGNAAGCAAA]
[+] EMBL BX467878 [AGGCAAGAATCCGCACGAGGGTGGGATAGCATGTCTTTTGTTCAAAAGAGAATTAAAAGTGTAGAGCTACGATCAGTTTTAAAACAAAGCGTTATAACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCCTTTTTGCGATCAGTGTGGGAAATCTAACAATAAAAGTCAGCAAAAAAAAACAAGCGTAATCAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGATCACCATTGCGGTGATCGCTGTTTCGCAACGGAGACGATTGCCCTCGAAATGTCCAACGAGCCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGACCGTTCTTCAGCACAATCACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTTCGCGCCAAAGTGCGGCTCGTCCAACCGTTCGCGCACGTACGCGACCGCCTCCTCGTTGGTGAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCTACAAAAAACAGGGAAATATGTTTTAGCAACTCTTGCACGAGTAACAATTGCTCTCTCACACACACACACTTACCGGTGGTCGACTAGATCGAAGGAAAGCACGTCCGGGTTGGCAATGACCAGGTTTGTTCTCCTTCAGCGGGATAGTCGCCGAGGGCGCGGGGACGTCAGCCAGTATGCCCGGCCAGCACGGCCACAACGGCCCCTTGAAACGGCGATGAAAACCGGNCAGGACGTCCGGGGCAATGCGCTTCATGGTNCAGGGACTTGTTGACNCGGATGNGGAATCGNAAGCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5814#0 ATTGAAACTAAGCTACTAGTTTGCATTACAGTAGTGATCATC-GAGTGGGGTAGCATGCC 59
consensus_5814#1 -------------------------AGGCAAGAATCCGCACGAGGGTGGGATAGCATGTC 35
** * * ** * ***** ******* *
consensus_5814#0 TTTTGTGAAAAACAGAATTAAAAGTGTAGAGCTGCGATCAGTTTTAAAACAAAGCGTTAT 119
consensus_5814#1 TTTTGTTCAAAAGAGAATTAAAAGTGTAGAGCTACGATCAGTTTTAAAACAAAGCGTTAT 95
****** **** ******************** **************************
consensus_5814#0 AACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCC 179
consensus_5814#1 AACATAGAGATCTTTAAACATAAAACGAACGTTAACGATAAAACGGAGGTAGCTGCCTCC 155
************************************************************
consensus_5814#0 TTTTCGCGATCAGTG--GGAAATCTAACAATAAAAGTCACCAAAAAAAA-CAAGCGTAAT 236
consensus_5814#1 TTTTTGCGATCAGTGTGGGAAATCTAACAATAAAAGTCAGCAAAAAAAAACAAGCGTAAT 215
**** ********** ********************** ********* **********
consensus_5814#0 CAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGAT 296
consensus_5814#1 CAATAAACGAAAGGTTAACAGATGAAGAAAAAGCAGCCAATTAGGTAGTTGATGAGCGAT 275
************************************************************
consensus_5814#0 CACCATTGCGGTGATCGCTGTTTCGCAATAGAAACGATTCCCATCGAAATGTCCAACGAG 356
consensus_5814#1 CACCATTGCGGTGATCGCTGTTTCGCAACGGAGACGATTGCCCTCGAAATGTCCAACGAG 335
**************************** ** ****** ** *****************
consensus_5814#0 CCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGGCCGTTCTTCAGCACAAT 416
consensus_5814#1 CCAGCGGGCCGTTCAGTTGCTCGAGGAACCGATCTCGTACCGACCGTTCTTCAGCACAAT 395
****************************************** *****************
consensus_5814#0 CACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTT 476
consensus_5814#1 CACCAGCACCGTAATGTTATCGACCGAGCCACGGCTGTACGATTGCAGCGCGATGCTTTT 455
************************************************************
consensus_5814#0 CGCGCCAAAGTGCGGCTCGTCCAACCGTTCACGCACGTACGCAACCGCCTCCTCGTTGGT 536
consensus_5814#1 CGCGCCAAAGTGCGGCTCGTCCAACCGTTCGCGCACGTACGCGACCGCCTCCTCGTTGGT 515
****************************** *********** *****************
consensus_5814#0 GAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCGGTGATCGAC--- 593
consensus_5814#1 GAACGTATCCCACAGCCCATCCGAGGCCAGGATCAGAAATTGTGGTCTACAAAAAACAGG 575
*********************************************** * **
consensus_5814#0 ----TAGATCGAAGGAAAGCACGTCCGGGTTGGCAATGACCAGGTTTTTCTCCTTCA--- 646
consensus_5814#1 GAAATATGTTTTAGCAACTCTTGCACGAGT-AACAATTGCTCTCTCACACACACACACTT 634
** * ** ** * * ** ** **** * * * * **
consensus_5814#0 GCGGATAGTCGCCCGGGGCGCGGGACGTCGC--CAGTAATGCCCGCCACCCGGCCACACG 704
consensus_5814#1 ACCGGTGGTCGACTAGATCGAAGGAAAGCACGTCCGGGTTGGCAATGACCAGGTT-TGTT 693
* * * **** * * ** *** * * * * ** * *** **
consensus_5814#0 GCCTTTGAACGCGATGAAACCGCCGGCGTCCGCGATGCGCTTCTGCTCCCGCACCTGCTG 764
consensus_5814#1 CTCCTTCAGCGGGAT--AGTCGCCGA-GGGCGCGGGG-ACGTCAGCCAGTATGCCCGGC- 748
* ** * ** *** * ***** * **** * * ** ** ** *
consensus_5814#0 CGGCTTGTGGTCGAACGACAGCGGGATCCGCGTTACCCCTTGAAGTCGCACATGACGCCG 824
consensus_5814#1 CAGCACGGCCACAACGGCCCCTTGAAACGGCGATG------AAAACCGGNCAGGACGTCC 802
* ** * * * * * * * * *** * ** ** ** **** *
consensus_5814#0 CGCGAATCGC-CCACATTGGCCACTATCAGCTTGGTGCGG-TGTATGACCGCAATCAGGG 882
consensus_5814#1 GGGGCAATGCGCTTCATGGTNCAGGGACTTGTTGACNCGGATGNGGAATCGNAAGCAAA- 861
* * * ** * *** * ** * *** *** ** * ** ** **
consensus_5814#0 GCGGTCGTACCGGCAAAGTCCGACATTTTCTTCGCCGCCTCCACCAGATCGTAATCGGCC 942
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GCCAGCACCTCGTCGGTAATGATCTTGCCAAAGTTGATGCTGCCATTCTGCACGTAGCAG 1002
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CGGGCGTCGTACGTTTTCGGCTTTGCCGGCACGGACTCACCACCGCCCGACGTCCCGTTC 1062
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 AGCAGGTTCTTCTTCACCTGCTGCCGGGCCGGCGACTGATTGCCCATGTACTTGCTCAGC 1122
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 AAATCGTTCTCCAGCATCTGATTGTTGTTGGCTGCTGCTCCTCCACCACCACCGTTCGCT 1182
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 GCACCATTGTTGCCCGTTCCGACCGTGTCCTCGGTTTTGGATTTGCGAAAGCTCTGTCGC 1242
consensus_5814#1 ------------------------------------------------------------
consensus_5814#0 CGCTGGACCGCACCCGACGGGTCACTATTTCCATTGTGCCGGCTCACCGG 1292
consensus_5814#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||