These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 840 fasta sequence [GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG] [+] EMBL BX608702 [GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG] [+] EMBL BX617985 [ ACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCA ] consensusID : consensus_5827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT] [+] EMBL BM614094 [CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT] consensusID : consensus_5827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG] [+] EMBL BX626296 [GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5827#0 GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAA 60 consensus_5827#2 ----------------------------------GGCTAAAGCCGCAGACGGTTGAAGAA 26 consensus_5827#1 ------------------------------------------------------------ consensus_5827#0 TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 119 consensus_5827#2 TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 85 consensus_5827#1 ------------------------------CCGAATGTTTCGAATAATATCC-CGAGCTC 29 ** * * ** * ** ** ** ** consensus_5827#0 TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGAT 179 consensus_5827#2 TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGAT 145 consensus_5827#1 TGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTG--GCTAAATAACCGGCTTTACGAT 87 * * *** *** **** * ** * * *** ************ consensus_5827#0 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAA 239 consensus_5827#2 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 205 consensus_5827#1 CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 147 ***************************** ********************* ******** consensus_5827#0 CATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCA 299 consensus_5827#2 CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 265 consensus_5827#1 CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 207 *********** ***************** ****************************** consensus_5827#0 TCATCATCATCATCGTC---------GGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCC 350 consensus_5827#2 TCATCATCATCATC---------------------------------------------- 279 consensus_5827#1 TCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCC 267 ************** consensus_5827#0 GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTG 410 consensus_5827#2 ------------------------------------------------------------ consensus_5827#1 GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTG 327 consensus_5827#0 TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 470 consensus_5827#2 ------------------------------------------------------------ consensus_5827#1 TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 387 consensus_5827#0 TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 530 consensus_5827#2 ------------------------------------------ATCCTCCTCATCGGTCAA 297 consensus_5827#1 TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 447 ****************** consensus_5827#0 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 590 consensus_5827#2 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 357 consensus_5827#1 TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 507 ************************************************************ consensus_5827#0 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 650 consensus_5827#2 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 417 consensus_5827#1 AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 567 ************************************************************ consensus_5827#0 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 710 consensus_5827#2 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 477 consensus_5827#1 TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 627 ************************************************************ consensus_5827#0 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 770 consensus_5827#2 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 537 consensus_5827#1 GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 687 ************************************************************ consensus_5827#0 ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 830 consensus_5827#2 ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 597 consensus_5827#1 AT---------------------------------------------------------- 689 ** consensus_5827#0 TGGGAAATAG-------------------------------------------------- 840 consensus_5827#2 TGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATA 657 consensus_5827#1 ------------------------------------------------------------ consensus_5827#0 ------ consensus_5827#2 AATTCG 663 consensus_5827#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||