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Anopheles gambiae
cluster # 5827 cluster # 5827       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5827#0 length = 840 sequences # 2  
consensus_5827#1 length = 689 sequences # 1  
consensus_5827#2 length = 663 sequences # 1  

consensusID : consensus_5827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 840
fasta sequence
                              [GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG]

[+] EMBL BX608702             [GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG]
[+] EMBL BX617985             [                   ACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAACATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCA                                                                                                                                                                                                                                                                                                                       ]


>consensus_5827#0 GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAA TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTT CGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGATC TAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAAC ATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCAT CATCATCATCATCGTCGGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCCGGCCGAACAC GTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTGTTTTATGCAT TCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCAT TAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCT ACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGA ATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCG CCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAA TAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGT ATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAG



consensusID : consensus_5827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT]

[+] EMBL BM614094             [CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACAT]


>consensus_5827#1 CCGAATGTTTCGAATAATATCCCGAGCTCTGATGCTCATCAAAATCTAAACTTTTAAGCT GGTTGGCTAAATAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTT ATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAA ACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCATCATCGTCGGGAAGG AGCGCTGGTGCAGCGAACGCGAGGGCCGGCCGAACACGTTGGAGAGAATGGTTTGGTGCT GCAGTGCTGTTTACCTTGGCGACACTGTTTTATGCATTCATATGCGTCGTGCTTGGAGCA CCGTTGGATCAGTACGAAGAAACATCATCGCTGGCATTAACACTGACCACGGTTACCATA TTCCCGATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACA CTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATC GGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCA TGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAAT GTGTTTAATCTGCTGAGCACGGTGTACAT



consensusID : consensus_5827#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence
                              [GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG]

[+] EMBL BX626296             [GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAATTCG]


>consensus_5827#2 GGCTAAAGCCGCAGACGGTTGAAGAATGGACGTACAGGCACAAAGCGCCATCGCGACCAA GTTGTTTATCAACATTAGCGTTCTTTCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCT GCTGTACAGTAACCGGCTTTACGATCTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTAT TTTACCGCTTTCGGAAATACTTAAACATTTCTATGTTAAACAAATGTTTCAACTTGAAAC TGGACTGAAAAGTGGCCCACCGTCATCATCATCATCATCATCCTCCTCATCGGTCAATCA CACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAATAGC TATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCATCA GTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTGGTT GGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTACATA AGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTGTGG GAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATAAAT TCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5827#0      GATGCTCATCAATATCTAAACTTTTAAGCTGGTTGGCTAAAGCCGCAGACGGTTGAAGAA 60
consensus_5827#2      ----------------------------------GGCTAAAGCCGCAGACGGTTGAAGAA 26
consensus_5827#1      ------------------------------------------------------------
                                                                                  

consensus_5827#0      TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 119
consensus_5827#2      TGGACGTACAGGCACAAAGCGCCATCGCGACCAAGTTGTTT-ATCAACATTAGCGTTCTT 85
consensus_5827#1      ------------------------------CCGAATGTTTCGAATAATATCC-CGAGCTC 29
                                                    ** * *  **  *  ** **   **  ** 

consensus_5827#0      TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAATCGGCTTTACGAT 179
consensus_5827#2      TCGATTGCGCTAAACTCTTCGTTTTTTGTGTATCTGCTGTACAGTAACCGGCTTTACGAT 145
consensus_5827#1      TGATGCTCATCAAAATCTAAACTTTTAAGCTGGTTG--GCTAAATAACCGGCTTTACGAT 87
                      *      *   *** ***    ****    *   **  *   * *** ************

consensus_5827#0      CTAGGAAAGTGCTGTTCGTCAGCTGTGCTGCTTATTTTACCGCTTTCGGAAGTACTTAAA 239
consensus_5827#2      CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 205
consensus_5827#1      CTAGGAAAGTGCTGTTCGTCAGCTGTGCTACTTATTTTACCGCTTTCGGAAATACTTAAA 147
                      ***************************** ********************* ********

consensus_5827#0      CATTTCTATGTAAAACAAATGTTTCAACTCGAAACTGGACTGAAAAGTGGCCCACCGTCA 299
consensus_5827#2      CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 265
consensus_5827#1      CATTTCTATGTTAAACAAATGTTTCAACTTGAAACTGGACTGAAAAGTGGCCCACCGTCA 207
                      *********** ***************** ******************************

consensus_5827#0      TCATCATCATCATCGTC---------GGGAAGGAGCGCTGGTGTAGCGAACGCGAGGGCC 350
consensus_5827#2      TCATCATCATCATC---------------------------------------------- 279
consensus_5827#1      TCATCATCATCATCATCATCATCGTCGGGAAGGAGCGCTGGTGCAGCGAACGCGAGGGCC 267
                      **************                                              

consensus_5827#0      GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCAACACTG 410
consensus_5827#2      ------------------------------------------------------------
consensus_5827#1      GGCCGAACACGTTGGAGAGAATGGTTTGGTGCTGCAGTGCTGTTTACCTTGGCGACACTG 327
                                                                                  

consensus_5827#0      TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 470
consensus_5827#2      ------------------------------------------------------------
consensus_5827#1      TTTTATGCATTCATATGCGTCGTGCTTGGAGCACCGTTGGATCAGTACGAAGAAACATCA 387
                                                                                  

consensus_5827#0      TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 530
consensus_5827#2      ------------------------------------------ATCCTCCTCATCGGTCAA 297
consensus_5827#1      TCGCTGGCATTAACACTGACCACGGTTACCATATTCCCGATCATCCTCCTCATCGGTCAA 447
                                                                ******************

consensus_5827#0      TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 590
consensus_5827#2      TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 357
consensus_5827#1      TCACACACCTACCAGCTGCTGCTATCAGAAACACTCGAGCTGAAAAGCCCGCTAACAAAT 507
                      ************************************************************

consensus_5827#0      AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 650
consensus_5827#2      AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 417
consensus_5827#1      AGCTATCTGAATCTACTCAAAAACAACTGCATCGGAGTGATTCTGGGGGCCTGGGGAGCA 567
                      ************************************************************

consensus_5827#0      TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 710
consensus_5827#2      TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 477
consensus_5827#1      TCAGTGGTCGCCCCGTTGGATTGGGATCGACCATGGCAAGTTTATCCCATCCCCAATGTG 627
                      ************************************************************

consensus_5827#0      GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 770
consensus_5827#2      GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 537
consensus_5827#1      GTTGGTTCAATAGGAGGATTGTTTGGCATGAATGTGTTTAATCTGCTGAGCACGGTGTAC 687
                      ************************************************************

consensus_5827#0      ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 830
consensus_5827#2      ATAAGCATGTATCGTAATCGACGGGCCAAGGCACAGTAGTAGTAACCTTTGCAGTATTTG 597
consensus_5827#1      AT---------------------------------------------------------- 689
                      **                                                          

consensus_5827#0      TGGGAAATAG-------------------------------------------------- 840
consensus_5827#2      TGGGAAATAGAAAGCTTATCTAGTCGTGTGTATGCCAAAATATGTCTCAATGACGGAATA 657
consensus_5827#1      ------------------------------------------------------------
                                                                                  

consensus_5827#0      ------
consensus_5827#2      AATTCG 663
consensus_5827#1      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)