These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTTTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAGTGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGAAA] [+] EMBL BM622066 [CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTTTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAGTGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGAAA] consensusID : consensus_5830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence [CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACACGAACGACACACACACACAGCAGGCCACAAAGTCGAATGGA--TGTGTGTGGTGTATCGGTTTTGTTGAAGCAAAGTGTGT---AGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCG-TTTTCCTTTTTAAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAA------AGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAAAAAAAGAAAACCAATCGAAAGGCTAA] [+] EMBL BM656733 [CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCACGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTGTCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACACGAACGACACACACACACAGCAGGCCACAAAGTCGAATGGA TGTGTGTGGTGTATCGGTTTTGTTGAAGCAAAGTGTGT AGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCG TTTTCCTTTTTAAAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAA AGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAAAA ] [+] EMBL BM614319 [ ccgCGCGCTTTTCACAACGGAAATCGGCCACCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACACGAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGTT TTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTGTTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTT AAGCTGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAAACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGTTGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGCGCGAAAGAGTGTGTGTGTGTGTGTGAAGAGAAAGAAAACCAATCGAAAGGCTAA] consensusID : consensus_5830#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACTCTCGGTTTTTTTTTCTCTTGATACTTGTGTCCCGGGTTTGACGTAAAAATGCTTACATGAAAATGTAAGATGTGGAAAGGAGAAGCGCAGGCAGGAGAAAGAAGAAGGGGATCGTGTACTGTAAAGGAAAAAAAAAAATCTATAAACTAATAGGTCTAACAAATATGAAACACAACAACACACACCTTACGACGTTTTTATTAAAGACTTAAGGGAGAGAGAAAGAGAGAGCGGAAAGGAAAAAGAGAGAGAGAGAGTGTGTTGCAAATGAGGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGGAAAGAGAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAAAAAGCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG] [+] EMBL BM633122 [CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAAACACGCTGCACGCCAGATTTCGACACAACACTCTCGGTTTTTTTTTCTCTTGATACTTGTGTCCCGGGTTTGACGTAAAAATGCTTACATGAAAATGTAAGATGTGGAAAGGAGAAGCGCAGGCAGGAGAAAGAAGAAGGGGATCGTGTACTGTAAAGGAAAAAAAAAAATCTATAAACTAATAGGTCTAACAAATATGAAACACAACAACACACACCTTACGACGTTTTTATTAAAGACTTAAGGGAGAGAGAAAGAGAGAGCGGAAAGGAAAAAGAGAGAGAGAGAGTGTGTTGCAAATGAGGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGGAAAGAGAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAAAAAGCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5830#0 -----------------CCGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 43 consensus_5830#1 -------------CCGGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 47 consensus_5830#2 CCGCGGACGCGTGGGCGAGGCGAACGGAGCGTTTTATTCTTCGGCTGCTGCTGCGAGTAA 60 ***************************************** consensus_5830#0 ACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCA 103 consensus_5830#1 ACACGCTGCACGCCAGATTTCGACACAACACAGCGAACCCAATCCCATCTTACACCAGCA 107 consensus_5830#2 ACACGCTGCACGCCAGATTTCGACACAACACT-----CTCGGTTTTTTTTTCTCTTGATA 115 ******************************* * * * * ** * consensus_5830#0 CGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTG 163 consensus_5830#1 CGAGAGAGGAAAAGATATTCAGAAGTTCATATTTTTCCAGCAAACCCCAGTGTGTCAGTG 167 consensus_5830#2 CTTG-----------TGTCCCGGGTTTGACGT-------AAAAATGCTTACATGAAAATG 157 * * * * * * ** * * *** * ** * ** consensus_5830#0 TCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCA 223 consensus_5830#1 TCCTGTGTGTGTGAGTGCTTGCTTGTGTTGTATCGCGCTTTTCACAACGGAAATCGGCCA 227 consensus_5830#2 TAAGATGTG-GAAAGGAGAAGCGCAGGCAGGAGAAAG------AAGAAGGGGATCGTGTA 210 * **** * ** ** * * * * * * ** **** * consensus_5830#0 CCATCCGACGGGGGGGCAGTAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCTAAACAC 283 consensus_5830#1 CCATCCGACGGGGGGGCAGCAGTACTGTGCGTGAGTGTGTGCTTTCTGTGTGCAAAACAC 287 consensus_5830#2 CTGT---AAAGGAAAAAAAAAAATCTATAAACTAATAGGT--CTAACAAATATGAAACAC 265 * * * ** * * ** * * * ** * * ****** consensus_5830#0 GAACGACACACACACACAGCAGGCCACCAAGTCGAATGGATCTGTGTGTGGTGTATCGGT 343 consensus_5830#1 GAACGACACACACACACAGCAGGCCACAAAGTCGAATGGAT--GTGTGTGGTGTATCGGT 345 consensus_5830#2 -AACAACACACAC-CTTACGACGTTTTTA---TTAAAGACT-----TAAGGGAGAGAG-- 313 *** ******** * * * * * ** * * * ** * * consensus_5830#0 TTTG---AAGCAAAGTGTGTAGAAGAAGAAGAAGAAGAAGCGAGCTCTTTTTTGTTGCTG 400 consensus_5830#1 TTTGTTGAAGCAAAGTGTGTAGAAGAAGAAGAAGAAG---CGAGCTCTTTTTTGTTGCTG 402 consensus_5830#2 -------AAAGAGAGAGCGGAAAGGAAAAAGAGAGAGA-GAGAG------TGTGTTGCAA 359 ** * ** * * * * *** **** ** *** * ****** consensus_5830#0 TTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGTTGTTCCGTTTTTCCTTTTTAAGC 460 consensus_5830#1 TTGGTTGCTTTAATTTTCGCGCTACGTCCCCAGCTGCTGTTCCGTTTTCCTTTTTAAAGC 462 consensus_5830#2 ATGA--GGAATAAATTCCGCAGAAAGGCGAAGAGAGAAGAGCAGG----------AAAGA 407 ** * *** ** *** * * * * * * * *** consensus_5830#0 TGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAA 520 consensus_5830#1 TGCTTCCCCGCGAAAGAAGGAAATGCGGCGGCTTCTTCCGGGCCCGATTTCCACCGCGAA 522 consensus_5830#2 GAATAAAATGAAACAAGTGAACACACGTTGTGCATGTGCAAACAAGGCCTGTAA---AAA 464 * * * * * * * ** * * * * * * * ** consensus_5830#0 ACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGT 580 consensus_5830#1 ACGAGTGATGAAAACATGAGCACGTACAGCAACAACAGCAACCACAGCAAGTGCAACCGT 582 consensus_5830#2 GCAAACAGAGAGAGAGAGAGAAAGAGAGATGCAAAGAGTAAG------------------ 506 * * ** * *** * * ** ** ** consensus_5830#0 TGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGAGAGAGAAAAAGAG 640 consensus_5830#1 TGTTTTGTTTCGAAGGAGTGATATTTGAAGAGAAAGAGAGAGAGAGCGCGAAAGAGTGTG 642 consensus_5830#2 ------------------------------------------------------------ consensus_5830#0 TGTGAGACAGAGAGAGATAGAGAGAGGGAGAAAGAGAGAAAGAAAGGGGTGAGAGAGAGA 700 consensus_5830#1 TGTGTGTGTGTGAAAAAAAAGAAAACCAATCGAAAGGCTAA------------------- 683 consensus_5830#2 ------------------------------------------------------------ consensus_5830#0 AA 702 consensus_5830#1 -- consensus_5830#2 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||