|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1157 fasta sequence
[CCGGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATATGAATGTATTAAAACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTGTGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAAAAACACACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCGCAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTGTGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAACTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAGAAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAACCAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTAACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGCGCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC]
[+] EMBL BM628790 [CCGGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATATGAATGTATTAAAACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTGTGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAAAAACACACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCGCAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTGTGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAACTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAGA ]
[+] EMBL BM614785 [ cCGGGATATTATAAAGAAACAAGAGAAACGAATGTGTGTAGTATGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGAAGAAAAGTGATGTAAAACAGTGCAACAAATGAG TTTTTTTCCTATTAGAGGATAAAATCGAACTGG AAATGTAGAAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAACCAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTAACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGCGCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC]
consensusID : consensus_5834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAAAGAAGAAGTACACACACACACACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACCCACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAAGTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCGAAGTGCAGAAGGTTGATTCACTTGACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAAAGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAAAAAACGAGCATGTCCAAATACAAATAACAGTTAATGATGCCACGAAGAGAAAGGAAAACTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT]
[+] EMBL BX615505 [CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAAAGAAGAAGTACACACACACACACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACCCACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAAGTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCGAAGTGCAGAAGGTTGATTCACTTGACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAAAGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAAAAAACGAGCATGTCCAAATACAAATAACAGTTAATGATGCCACGAAGAGAAAGGAAAACTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT]
consensusID : consensus_5834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CATTAAACCGAAACCACTATTATGTGTGCTATACGCGCGCACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTTAAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATATGAATGTATTAATACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTATGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAACAAAAGGCAGGCATGTG]
[-] EMBL BX466661 [CATTAAACCGAAACCACTATTATGTGTGCTATACGCGCGCACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTTAAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATATGAATGTATTAATACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTATGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAACAAAAGGCAGGCATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5834#0 ------------------------------------------------------------
consensus_5834#2 -----------------CATTAAACCGAA--ACCACTATTATGTGTGCTATAC-GCGCGC 40
consensus_5834#1 CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGG 60
consensus_5834#0 ------------------------------------------------------------
consensus_5834#2 ACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTT 100
consensus_5834#1 AAAGGGAAAGAGATGTTATGTG-AATAGAACAGAGTGTAAAGAAGAAGTACACACACACA 119
consensus_5834#0 -------------------------------------------------------CCGGA 5
consensus_5834#2 AAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGA 160
consensus_5834#1 CACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAAC 179
*
consensus_5834#0 AC-AATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATAT-----GAATGTATTAAAA 59
consensus_5834#2 AC-AATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATAT-----GAATGTATTAATA 214
consensus_5834#1 TCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGC 239
* * *** ** * * * * ** ** * * ******
consensus_5834#0 CATAA--------CAAAGTAAAACGATACAAGAACAGA--AGCAAACTACACGATCAAAG 109
consensus_5834#2 CATAA--------CAAAGTAAAACGATACAAGAACAGA--AGCAAACTACACGATCAAAG 264
consensus_5834#1 CATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTA- 298
*** * * * * * *** * * * ** * ** *** * *
consensus_5834#0 TGTTGATCGATGCAAATCAATCGAT-CGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGA- 167
consensus_5834#2 TGTTGATCGATGCAAATCAATCGAT-CGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGA- 322
consensus_5834#1 TGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACC 358
**** **** * ** *** * * ** ** *** ** * * *** *
consensus_5834#0 ---AAGAGAATGGAAACCCC--------CCGTTTAAGCCCGTTAAAATGTGTCTGAGTGT 216
consensus_5834#2 ---AAGAGAATGGAAACCCC--------CCGTTTAAGCCCGTTAAAATGTGTCTGAGTGT 371
consensus_5834#1 CACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAA 418
**** ** * * * ** * * * *** * *
consensus_5834#0 GTGTGAGTACATTTTAGTGA-------GAAAACTACTTCTTGTGTCAAGTTGTGTGAATG 269
consensus_5834#2 GTGTGAGTACATTTTAGTGA-------GAAAACTACTTCTTGTGTCAAGTTATGTGAATG 424
consensus_5834#1 GTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCG 478
** * **** **** ** ** ** * * *** ** *
consensus_5834#0 TGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAA 329
consensus_5834#2 TGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAA 484
consensus_5834#1 AAGTGCAGAAGGTTGATTCACTTG-ACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAA 537
** * ** * ** * ** * * ** ** *** ** ****
consensus_5834#0 AAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTA 389
consensus_5834#2 AAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTA 544
consensus_5834#1 AGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAA 597
* * * ****** ** * * * * ** **** * ** *
consensus_5834#0 AAGTTAAACA---CTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAA--AAACA 444
consensus_5834#2 AAGTTAAACA---CTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAAC 601
consensus_5834#1 AAAACGAGCATGTCCAAATACAAATAACAGTTA--ATGATGCCACGAAGAGAAAGGAAAA 655
** * ** * *** * * * ** ** ** * * **** * ** **
consensus_5834#0 CACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCG 504
consensus_5834#2 AAAAGGCAGGCATGTG-------------------------------------------- 617
consensus_5834#1 CTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT--------------------- 694
* * *
consensus_5834#0 CAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTG 564
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 TGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAA 624
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 CTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAG 684
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 AAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAAC 744
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 CAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTA 804
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 ACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGC 864
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 GCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGT 924
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 TATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAG 984
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 CAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCT 1044
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 ATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACG 1104
consensus_5834#2 ------------------------------------------------------------
consensus_5834#1 ------------------------------------------------------------
consensus_5834#0 TACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC 1157
consensus_5834#2 -----------------------------------------------------
consensus_5834#1 -----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||