cluster # 5836

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Anopheles gambiae
cluster # 5836 cluster # 5836 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5836#0 length = 718 sequences # 2

consensus_5836#1 length = 472 sequences # 1
consensus_5836#2 length = 419 sequences # 1

consensusID : consensus_5836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 718
fasta sequence

                              [CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGTGCTGGAAA]

[+] EMBL BM615581             [CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGTGCTGGAAA]
[+] EMBL BM626819             [                           ccgATTTTCTTCTATTGCCGCACAGTAAATTGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGACAAAAACTATGAAAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGATGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGCATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCATGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCGCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTGGACGAAAAGAAAAAAATACCGGAAAATGTGCGCACGAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAATGGGTTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTATGCATA                                                    ]




>consensus_5836#0
CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGC
TAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAA
AACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGAT
TCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATGGTTCGGAA
GAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCC
CGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGC
GATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAA
CTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACCTACATG
CAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATG
ATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGACGTGCTGGCC
CGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCCGGAATTCGTA
TGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGTGCTGGAAA

consensusID : consensus_5836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CAGATCGGCACGAGGTATAAGCAAAATATAACGGACTAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAAT]

[+] EMBL BX467873             [CAGATCGGCACGAGGTATAAGCAAAATATAACGGACTAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAAT]




>consensus_5836#1
CAGATCGGCACGAGGTATAAGCAAAATATAACGGACTAAAAACTATGACAAGGTTCTGGA
AACATTAAACGCATTGAACATAAGCGAAACGGACGCCGATTCGTTCCGGTGCGAAGTGGA
TATCTTGCTGGAAAGCTTTTACGTTTGCCATGGTTCGGAAGAGGAAACCGTGAACCGGAT
TGCCATTAAATGCTTAAACCTGCTGAAACGTGCCTGTGCCCGTGGAGAATCATTTCAAAA
CGCCATAGTATCCCGCGTGGAATTCCTTGAGCGTGTGCGCGATATTTTGGTAGACGAAAA
GAAAACAATACCGGAAAATGTGCGCACAAACTGTCTGCAACTGCTGGCCAACCTTTGCGT
CCAGAACAGAAGCAACCAAGAAAGGATCATTACGTACATGCAAACCTTTCTGCTCACCAA
CGTTTCCTCCAACGGAAGCTATGCAAATGCATCGGCAATGATTTTGTACAAT

consensusID : consensus_5836#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GACCCACGCGTCCGCGGACGCGTGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACAAATCAAATAAATATATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAAAAAATCACAAATTTTGGGGAGGAATTATACAACATTGCTTATAAACCTGACCTAATTTTACGTGAGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCAAATCTGACAGATGGATGTTTTCTAAGCACAGTGTCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAAACGGACGCCGAT]

[+] EMBL BM645028             [GACCCACGCGTCCGCGGACGCGTGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACAAATCAAATAAATATATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAAAAAATCACAAATTTTGGGGAGGAATTATACAACATTGCTTATAAACCTGACCTAATTTTACGTGAGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCAAATCTGACAGATGGATGTTTTCTAAGCACAGTGTCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAACTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAAACGGACGCCGAT]




>consensus_5836#2
GACCCACGCGTCCGCGGACGCGTGGGTGTGTTTTGATTCGGCAAATACATTTGAATATAT
GAAACAAATCAAATAAATATATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAA
AAAAATCACAAATTTTGGGGAGGAATTATACAACATTGCTTATAAACCTGACCTAATTTT
ACGTGAGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCAAATCTGACAGATGGATGTTTT
CTAAGCACAGTGTCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGCTA
ACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGATAAAAA
CTATGACAAGGTTCTGGAAACATTAAACGCATTGAACATAAGCGAAAACGGACGCCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5836#0      CCGCGGACGCGTGGGCGAGCAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAATCGC 60
consensus_5836#1      ------------------------------------------------------------
consensus_5836#2      ------------------------------------------------------------
                                                                                  

consensus_5836#0      TAACTAGCAAACTAATTCCTGTTCACCATGATTGATATAAAGCAAAATATAACGGA-TAA 119
consensus_5836#1      ------------------CAGATCGGCACGA--GGTATAA-GCAAAATATAACGGACTAA 39
consensus_5836#2      --------------------------------------GACCCACGCGTCCGCGGACGCG 22
                                                             *  **        ****    

consensus_5836#0      AAACTATGACAAGGTTCTGGAAACA---TTAAACGCATTGAACATAAGCGAAACGGACGC 176
consensus_5836#1      AAACTATGACAAGGTTCTGGAAACA---TTAAACGCATTGAACATAAGCGAAACGGACGC 96
consensus_5836#2      TGGGTGTGTTTTGATTCGGCAAATACATTTGAATATATGAAACA--AATCAAATAAATAT 80
                          * **    * *** * *** *   ** **   **  ****  *   ***   *   

consensus_5836#0      CGATTCGTTCCGGTGCGAA----GTGGATATCTTGCTGGAAAGCTTTTATGTTTGCCATG 232
consensus_5836#1      CGATTCGTTCCGGTGCGAA----GTGGATATCTTGCTGGAAAGCTTTTACGTTTGCCATG 152
consensus_5836#2      --ATTACTTACCAAGCCACTTTTGCAGACAATCCGCAGTAAAA-----AAAATCACAA-- 131
                        ***  ** *   ** *     *  ** *    ** * ***      *   *  * *  

consensus_5836#0      GTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTG 292
consensus_5836#1      GTTCGGAAGAGGAAACCGTGAACCGGATTGCCATTAAATGCTTAAACCTGCTGAAACGTG 212
consensus_5836#2      ATTTTGGGGAGGAAT---TATACAACATTGCTTATAAACCT---GACCTAATTTTACGTG 185
                       **  *  ******    *  **   *****   ****       ****  *   *****

consensus_5836#0      C-CTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGA-ATTCCTTGA 350
consensus_5836#1      C-CTGTGCCCGTGGAGAATCATTTCAAAACGCCATAGTATCCCGCGTGGA-ATTCCTTGA 270
consensus_5836#2      AGCCCCATTCGTAGCAGTTCGTACGCAGAGGTCA-AATCTGACAGATGGATGTTTTCTAA 244
                        *      *** *    ** *    * * * ** * * *  *   ****  **   * *

consensus_5836#0      GCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAA 410
consensus_5836#1      GCGTGTGCGCGATATTTTGGTAGACGAAAAGAAAACAATACCGGAAAATGTGCGCACAAA 330
consensus_5836#2      GCACAGTGTCGAG--CAGGGTACCTTATTTTCTTCTATTGCCGCACAGTAAAT-CGCTAA 301
                      **       ***      ****    *         * * *** * * *     * * **

consensus_5836#0      CTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCAT 470
consensus_5836#1      CTGTCTGCAACTGCTGGCCAACCTTTGCGTCCAGAACAGAAGCAACCAAGAAAGGATCAT 390
consensus_5836#2      CTAGCA--AACTAATTCCTGTTCACCATGATTGATATA-AAGCAAAATATAACGGATAAA 358
                      **  *   ****  *  *    *     *      * * ******   * ** **** * 

consensus_5836#0      TACCTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGC 530
consensus_5836#1      TACGTACATGCAAACCTTTCTGCTCACCAACGTTTCCTCCAACGGAAGCTATGCAAATGC 450
consensus_5836#2      AAC-TATG-ACAAGGTTCTGGAAACATTAAA--CGCATTGAACATAAGCGA---AAACGG 411
                       ** **    ***   * *     **  **     * *  ***  **** *   *** * 

consensus_5836#0      ATCGGCAATGATTTTGTACAATGGATTTATCTACAAAGCAGTCGACTTGAATCTGCACGA 590
consensus_5836#1      ATCGGCAATGATTTTGTACAAT-------------------------------------- 472
consensus_5836#2      A-CGCCGAT--------------------------------------------------- 419
                      * ** * **                                                   

consensus_5836#0      CGTGCTGGCCCGTTTGCTTGACAACGTGGAAGCTAATCAAACTGCTCAAACAGATGTGCC 650
consensus_5836#1      ------------------------------------------------------------
consensus_5836#2      ------------------------------------------------------------
                                                                                  

consensus_5836#0      GGAATTCGTATGCATATTTCTGGAGTACCTTATTGCTGAAAGTAACGAGATGGTGCAGGT 710
consensus_5836#1      ------------------------------------------------------------
consensus_5836#2      ------------------------------------------------------------
                                                                                  

consensus_5836#0      GCTGGAAA 718
consensus_5836#1      --------
consensus_5836#2      --------