These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1041 fasta sequence [CCGAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTTTTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCGTCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAATTCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTAATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTCGCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCATCCCTTTTGGTCAACTTTTCCATATTTCTATTCAT] [+] EMBL BM618284 [CCGAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGA ] [+] EMBL BX624539 [ AGCCTCTTCCATTGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGAACGCGTGAGAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAA ] [+] EMBL BX628761 [ TACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCACTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCTTCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTTTTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCGTCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAATTCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTAATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTCGCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCATCCCTTTTGGTCAACTTTTCCATATTTCTATTCAT] consensusID : consensus_5846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTACCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACACAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATAGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAACGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTCGGAGGGATTGGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACG] [+] EMBL BM632590 [CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTACCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACACAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATAGGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGCAATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAACGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAACACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAAAGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAGCACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTGTCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAAAGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTCGGAGGGATTGGGCGCTTCCAAGACCGACACGATTCACCCTGGTGGACTCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5846#0 ------------------------------------------------------------ consensus_5846#1 CCGGGGGATCAACGACGGCTACGGGATGTGGTGACCACCGCCTTTCGCACAAAACTCTTA 60 consensus_5846#0 ----------------------------------------------------------CC 2 consensus_5846#1 CCACAACCCTGGTAACAGCACAACCTCTCATTATACATTTATATACATAGTAACTACACA 120 * consensus_5846#0 GAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATT 62 consensus_5846#1 CAAACAAACAAACAAACAACCATTCTGAGCGCAGAGCCCACACCACGAGCCTCTTCCATA 180 ********************************************************** consensus_5846#0 GGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCGAAACGCGATGC 122 consensus_5846#1 GGACGTCTCTTTTTTGGGATGACACAACAAATAGTGGCATAATTGATCTAAACGCGATGC 240 ************************************************ *********** consensus_5846#0 AATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTG-AACGCGTGA------------ 169 consensus_5846#1 AATAAGTTTTCTATTCTGCCTGTCCGTTCATGTCGGTGCAACGCGTGAAAGCGAACGAAA 300 ************************************** ********* consensus_5846#0 -GAGCGCCTACGGAACGGAAAATAGAATGAGACACTATTGAAACTACGGTTAACGATAAC 228 consensus_5846#1 CGAGCGCCTACGGAACGGAAAATTGAATGAGACACTATTGAAACTACGGTTAACGATAAC 360 ********************** ************************************ consensus_5846#0 ACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAA 288 consensus_5846#1 ACACACACACGAAACCTTAGCATAAAAGCAAAATGTGCGGTACAGTAAACAAGGGAAAAA 420 ************************************************************ consensus_5846#0 AGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAG 348 consensus_5846#1 AGGGGAAAGACTCATGAACCGCGGCCGGTACTTGGTCTCGAGGAAGGCACGAGAAAAAAG 480 ************************************************************ consensus_5846#0 CACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTTTGTCTTTGGCAGGGTGCATTTTG 408 consensus_5846#1 CACGCAGAACTGCTGTATATTTGCGAGGGGGCTGTTGTGTCTTTGGCAGGGTGCATTTTG 540 ************************************ *********************** consensus_5846#0 TCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAA 468 consensus_5846#1 TCGCAAGCTTTTTGTAAGATATGCTCCAAATGATATGGTGAGCAGAGCTGTAACGGACAA 600 ************************************************************ consensus_5846#0 AGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTTTCGGAGGGATTGG-CGCTTCCAA 527 consensus_5846#1 AGGCAAACACGCAGCGCTCTCTGGCGCTTGGTTTTTT-CGGAGGGATTGGGCGCTTCCAA 659 ************************************* ************ ********* consensus_5846#0 GACCGACACGATTCACCCTGGTGGACTCAACGACAACCACGACGACGACGATGACGATCA 587 consensus_5846#1 GACCGACACGATTCACCCTGGTGGACTCAACG---------------------------- 691 ******************************** consensus_5846#0 CTATACCCAACCACCACCAATTCATGATATATGATGGACCTCCGGGTGTCAGATGGCGCT 647 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 TCTCCTTTGACATTGTGGCCCGATCTACTTCCAATTAGTTCTTTTTTGTTTTGTTTTGTT 707 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 TTTTTTTGGTTGTATGTACTACGACGCAAGTTGTAAACACTATACATACGCCGAATCTCG 767 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 TCACCCCCTTCCTCACCATCCTTACCTCTCTCCTCAAGGTAGCCAATTTTTAAATCTAAT 827 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 TCTCCTTTGCATGATGTGTGTGCAACAACAAAGCTCGATGTGTACATGTTTTAGAGTTTA 887 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 ATTTTGTTTTTTGTTTTAACTTTTTCATCCGCAAAAAAGCAATACGCGGATGCGGACGTC 947 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 GCGCTCAAAATTCTAATCCCACGCTTTTGCTTCCAATGTTCTCCATCCCTAGCAGAGCAT 1007 consensus_5846#1 ------------------------------------------------------------ consensus_5846#0 CCCTTTTGGTCAACTTTTCCATATTTCTATTCAT 1041 consensus_5846#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||