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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence
[CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGCCAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTTCGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGGGTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGCACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCGGAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAACGTTTTATTCTGTGTTCAGTTGCGTTGCTGACTGCGTCGGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTGGACTTTGGCAAGCTGTTCAT]
[+] EMBL BM647996 [CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGCCAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTTCGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGGGTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGCACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCGGAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAACGTTTTATTCTGTGTTCAGTTGCGTTGCTGACTGCGTATGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGC ]
[+] EMBL BM652230 [ cCGGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTG ]
[+] EMBL BM639493 [ ccGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAACCCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTAAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAAGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACACCAAACGGATGGAGCACTTCGGTACACTGTACGTGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGGCCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGTCG TTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCG AGCAGGAGCTGGACTTTGGCAAGCTGTTCAT]
consensusID : consensus_5860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CCGGTTCCCGGTTGCAGACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCGAACGTGGCCGTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGAGCAGGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGTGAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGATGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACCGCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGCCTGTGGTACGGCCGTAACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCGCAGATGAAAAGCGTTGCATCGACAGATCTGGACGTGAGTCGGTTGTGCTTAGAAAAGCAAGCGAACGTGCTACACCGCTACAA]
[+] EMBL BM621008 [CCGGTTCCCGGTTGCAGACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCGAACGTGGCCGTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGAGCAGGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGTGAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGATGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACCGCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGCCTGTGGTACGGCCGTAACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCGCAGATGAAAAGCGTTGCATCGACAGATCTGGACGTGAGTCGGTTGTGCTTAGAAAAGCAAGCGAACGTGCTACACCGCTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5860#0 CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGC 60
consensus_5860#1 ------------------------------------------------------------
consensus_5860#0 CAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTT 120
consensus_5860#1 ------------------------------------------------------------
consensus_5860#0 CGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGG 180
consensus_5860#1 ------------------------------------------------------------
consensus_5860#0 GTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGC 240
consensus_5860#1 ------------------------------------------------------------
consensus_5860#0 ACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCG 300
consensus_5860#1 -------------------------------------CCGGTTCCCGGTTGCAGACGAGG 23
**** * ***** * *
consensus_5860#0 GAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAA 360
consensus_5860#1 AAAACATTC--GAGCCGACTCCAAACGGATGGAACACTTCGG---TACACTGTACAT-GG 77
** * ** * * * * * **** * * ** * *
consensus_5860#0 CGTTTTATTCTGTGTTCAGTTGCGT-TGCTGACTGCGTCGGGGCGGGATGAGAAAAACGA 419
consensus_5860#1 TACTGCAGCGGCTGCTGGATGAAGCATCCCGACCG-ACCAAAGCGGAATTGCTCAGA--A 134
* * ** * * * * * *** * * **** ** * * *
consensus_5860#0 TACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTG--TGTGCTCGATCC 477
consensus_5860#1 TCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCG 194
* ** * * * *** * * * ** * **** ** ** *****
consensus_5860#0 GCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTC 537
consensus_5860#1 GGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCG-AACGTGGCC 253
* * * * * ** * ** * ** * ** * *** *
consensus_5860#0 CAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCA 597
consensus_5860#1 GTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGAC----TACCCCGAGCA 309
** * *** ** ** * ***** *** * **** **
consensus_5860#0 TAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCG-TACCGTCG---- 652
consensus_5860#1 GGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGT 369
** *** * * ****** * ** *** *** *** * **
consensus_5860#0 GCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAG--GGAGGCGACACGCACA 710
consensus_5860#1 GAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGA 429
* **** * ** ** * ** * * * *** * ** * *
consensus_5860#0 AGGGCTACTACACCT-CGAAGCAGTACCGCAAATTCTGCGATCTTATGCCAC-ACGAGGA 768
consensus_5860#1 TGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACC 489
* ** *** ** * * * * ** * *** * * * ****
consensus_5860#0 AAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCA 828
consensus_5860#1 GCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGC-CTGTG-GTACGGCCGTA 547
* * *** ** *** ** * ** * * * * **** * * * *
consensus_5860#0 GCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATC-TATGGAA 887
consensus_5860#1 ACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCG 607
* * * * * **** *** * * * * * * * * * *
consensus_5860#0 -AGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGC 946
consensus_5860#1 CAGATGAAAAGCGTTGCATCGACAGATCTGGACGT-GAGTCGGTTGTGCTTAGAA-AAGC 665
***** * * * * * * ******* *** * * * * * **
consensus_5860#0 ATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTT 1006
consensus_5860#1 AAGCGAACGTGCTACACCGCTACAA----------------------------------- 690
* * * * ** *
consensus_5860#0 CGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTGGACT 1066
consensus_5860#1 ------------------------------------------------------------
consensus_5860#0 TTGGCAAGCTGTTCAT 1082
consensus_5860#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||