These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGTGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTTTTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCCTTTTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGNCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACATGATAGTAATATTGCGGGTCTTAAAATAACATTATTCTACCTCT] [+] EMBL BX620346 [TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGTGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTTTTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCCTTTTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGNCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACATGATAGTAATATTGCGGGTCTTAAAATAACATTATTCTACCTCT] consensusID : consensus_5866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCGTCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCCCTTCTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAGATTTTTTAAAGATGTGGCCAAATTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCCACAGATCCTCGAGTCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATATCGGTGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTATATACAACCGA] [+] EMBL BX467937 [AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCGTCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCCCTTCTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAGATTTTTTAAAGATGTGGCCAAATTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCCACAGATCCTCGAGTCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATATCGGTGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTATATACAACCGA] consensusID : consensus_5866#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 575 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGCCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCTCGATCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATACCGGTGCTCGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTATATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAAAACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGCTCCTGTACGACAT] [+] EMBL BM621316 [CCGCCCACGCGTCCGCCCACGCGTCCGCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGCCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCTCGATCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATACCGGTGCTCGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTATATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAAAACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGCTCCTGTACGACAT] [+] EMBL BX615303 [ GCAAATTTTGTTACTATTCTAACACGTAGGACTTTGCATCTTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACATCTCGCAGCATTACTGTCTTTCGTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5866#1 AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCG 60 consensus_5866#2 ------------------------------------------------------------ consensus_5866#0 ------------------------------------------------------------ consensus_5866#1 TCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTC 120 consensus_5866#2 ------------------------------------------------------------ consensus_5866#0 ---------TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTC 51 consensus_5866#1 TCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCC-CTT 179 consensus_5866#2 --------------------------------------------------CCGCCC-ACG 9 consensus_5866#0 TCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATA 111 consensus_5866#1 CTTC-CGCTCACT--TCGTCGTTTACTATTTGTCACA--TATGATCATT--TCCATATGA 232 consensus_5866#2 CGTC-CGCCCACGCGTCCGCGTTTACTATTTGTCACA--TATGATCATT--TCCATATGA 64 consensus_5866#0 AGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGA 171 ** ** * * ** * *** ** * * * *** ** ** ****** consensus_5866#1 TCAGTTTGAG------TCCATTT---CCTCGAAATGCGCTT-----------CTGCTGCA 272 consensus_5866#2 TCAGTTTGAG------TCCATTT---CCTCGAAATGCGCTT-----------CTGCTGCA 104 consensus_5866#0 TATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATG 231 * * * ** * ***** ** * ** *** * * consensus_5866#1 TGTCCCTCATCTGACTTGCTCCTT--GCAGATTTTTTAAAGATG--TGGCCAAATTTGTT 328 consensus_5866#2 TGTCCCTCATCTGACTTGCTCCTT--GCAAATTTTTTAAAGATG--TGGCCAATTTTGTT 160 consensus_5866#0 TGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTT 291 *** * * ** * ** * * ** *** * ** ** * *** consensus_5866#1 ACCCTTCCAACACGTAGGACCTTGCAT-CCTTTACATGATAGT-AATATTGCG-GTTCTT 385 consensus_5866#2 ACCCTTCCAACACGTAGGACCTTGCAT-CCTTTACATGATAGT-AATATTGCG-GTTCTT 217 consensus_5866#0 TTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCA 351 * * ** * ** ** * *** * * ** **** * ** consensus_5866#1 AAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTA 445 consensus_5866#2 AAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTA 277 consensus_5866#0 GAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTG---TTGG 408 *** * ** * ** * **** * * * * * consensus_5866#1 CTGTTTCATCTGCTTTGGAAATAGGCTCCAC---AGCGTCCCACAGATCCTCGAGTCTCT 502 consensus_5866#2 CTGTTTCATCTGCTTTGGAAATAGGCTCCAC---AGCGTCC---------TCGA-TCTCT 324 consensus_5866#0 ATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCC--------TTTTTCCGCT 460 * **** * *** * * ** * * ******* * * ** consensus_5866#1 AGAAAGATTTCCTACAAATTTCCACGT-TGATCGTTGACCGACTAGTCGTTCGATATCGG 561 consensus_5866#2 AGAAAGATTTCCTACAAATTTCCACGT-TGATCGTTGACCGACTAGTCGTTCGATACCGG 383 consensus_5866#0 CACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCAT 520 * *** * ** *** * ***** ** * * * *** ** * consensus_5866#1 TGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTA 621 consensus_5866#2 TGCT-CGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTA 442 consensus_5866#0 TTCCTCGAAATGCGCTTCTGCTG-CATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTT 579 * * *** * ** * ** ** ** * ** * * ** ** consensus_5866#1 TATACAACCGA------------------------------------------------- 632 consensus_5866#2 TATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAA 502 consensus_5866#0 TAAAGATGTGGN-CAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACAT 638 ** * * * consensus_5866#1 ------------------------------------------------------------ consensus_5866#2 AACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGC 562 consensus_5866#0 GATAGTAATATTGCGGGTCTTAAAATAACATT--ATTCTACCTCT--------------- 681 consensus_5866#1 ------------- consensus_5866#2 TCCTGTACGACAT 575 consensus_5866#0 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||