cluster # 5866

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5866 cluster # 5866 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5866#0 length = 681 sequences # 1

consensus_5866#1 length = 632 sequences # 1
consensus_5866#2 length = 575 sequences # 2

consensusID : consensus_5866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGTGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTTTTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCCTTTTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGNCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACATGATAGTAATATTGCGGGTCTTAAAATAACATTATTCTACCTCT]

[+] EMBL BX620346             [TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGTGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTTTTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCCTTTTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGNCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACATGATAGTAATATTGCGGGTCTTAAAATAACATTATTCTACCTCT]




>consensus_5866#0
TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATG
NGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCACGTT
TTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGATATGATCCA
GAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATGTGTTGGATA
ATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTTTTCACTTTG
ACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCAGAAACTGTA
CATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTT
CTTCGTCAGCAGATTTTAGCGAAGCGTCCCTTTTTCCGCTCACTTCGTCGTTTACTATTT
GTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTG
CTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGNCAATTTTGT
TACCCTTCCAACACGTAGGACCTTGCATCCCTTTACATGATAGTAATATTGCGGGTCTTA
AAATAACATTATTCTACCTCT

consensusID : consensus_5866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCGTCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCCCTTCTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAGATTTTTTAAAGATGTGGCCAAATTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCCACAGATCCTCGAGTCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATATCGGTGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTATATACAACCGA]

[+] EMBL BX467937             [AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCGTCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCCCTTCTTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAGATTTTTTAAAGATGTGGCCAAATTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCCACAGATCCTCGAGTCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATATCGGTGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTATATACAACCGA]




>consensus_5866#1
AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCG
TCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTC
TCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCCCTTC
TTCCGCTCACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTG
AGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAG
ATTTTTTAAAGATGTGGCCAAATTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTT
ACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTG
TCTTTCGCGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCG
TCCCACAGATCCTCGAGTCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGAC
CGACTAGTCGTTCGATATCGGTGCTACGATTCCCAAACAATTTGATACGTTAATAATTAT
ACCAGTACCATTCCAAAATTATATACAACCGA

consensusID : consensus_5866#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 575
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGCCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCTCGATCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATACCGGTGCTCGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTATATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAAAACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGCTCCTGTACGACAT]

[+] EMBL BM621316             [CCGCCCACGCGTCCGCCCACGCGTCCGCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTTTAAAGATGTGGCCAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATAGGCTCCACAGCGTCCTCGATCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTGACCGACTAGTCGTTCGATACCGGTGCTCGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTATATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAAAACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGCTCCTGTACGACAT]
[+] EMBL BX615303             [                                                                                                                                                    GCAAATTTTGTTACTATTCTAACACGTAGGACTTTGCATCTTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACATCTCGCAGCATTACTGTCTTTCGTGA                                                                                                                                                                                                                                                                                                                         ]




>consensus_5866#2
CCGCCCACGCGTCCGCCCACGCGTCCGCGTTTACTATTTGTCACATATGATCATTTCCAT
ATGATCAGTTTGAGTCCATTTCCTCGAAATGCGCTTCTGCTGCATGTCCCTCATCTGACT
TGCTCCTTGCAAATTTTTTAAAGATGTGGCCAATTTTGTTACCCTTCCAACACGTAGGAC
CTTGCATCCTTTACATGATAGTAATATTGCGGTTCTTAAAATAACATTATTCTACCTCTC
GCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTACTGTTTCATCTGCTTTGGAAATA
GGCTCCACAGCGTCCTCGATCTCTAGAAAGATTTCCTACAAATTTCCACGTTGATCGTTG
ACCGACTAGTCGTTCGATACCGGTGCTCGATTCCCACCCAAATTGATACGTTAACAATTA
TACCAGTACCATTCCAAAATTATATACACCCGAAATAATCTCCTTAATTTCAGCACGTTT
AATATATTAATCTGAAAAAAAAAACAACATGTATATTAATATTAAAACCAAGTTCAGTTT
CGCTTCTTCTCAATATCAAAGCTCCTGTACGACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5866#1      AGGCAGAATCGGCACGATGGACTTTGACGATCACTTGCCTGNTATGCTTTTGAACAACCG 60
consensus_5866#2      ------------------------------------------------------------
consensus_5866#0      ------------------------------------------------------------
                                                                                  

consensus_5866#1      TCTATATGATATGGTCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTC 120
consensus_5866#2      ------------------------------------------------------------
consensus_5866#0      ---------TATGATCCAGAAATTGTACATTTGCATCTTACACAGCCCTTTGATAAATTC 51
                                                                                  

consensus_5866#1      TCAACCATGTGTTGGATAATTCACTTTCTTCGTCAGCGGATTTTAGCGAAGCGTCC-CTT 179
consensus_5866#2      --------------------------------------------------CCGCCC-ACG 9
consensus_5866#0      TCAACCATGNGNTGGATAATTCACTTTCTTCGTCAGCGGATTCACGCGAAATTCTTGATA 111
                                                                                  

consensus_5866#1      CTTC-CGCTCACT--TCGTCGTTTACTATTTGTCACA--TATGATCATT--TCCATATGA 232
consensus_5866#2      CGTC-CGCCCACGCGTCCGCGTTTACTATTTGTCACA--TATGATCATT--TCCATATGA 64
consensus_5866#0      AGTCACGTTTTCACTTTGACGATCACTTGCTGATATACTTTTGAACAACCGTCGATATGA 171
                        ** **    *   *   ** * ***   **  * *  * *** **    ** ******

consensus_5866#1      TCAGTTTGAG------TCCATTT---CCTCGAAATGCGCTT-----------CTGCTGCA 272
consensus_5866#2      TCAGTTTGAG------TCCATTT---CCTCGAAATGCGCTT-----------CTGCTGCA 104
consensus_5866#0      TATGATCCAGAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAATTCTCAACCATG 231
                      *  * *  **      * *****    **   *  ** ***           *  *    

consensus_5866#1      TGTCCCTCATCTGACTTGCTCCTT--GCAGATTTTTTAAAGATG--TGGCCAAATTTGTT 328
consensus_5866#2      TGTCCCTCATCTGACTTGCTCCTT--GCAAATTTTTTAAAGATG--TGGCCAATTTTGTT 160
consensus_5866#0      TGTTGGATAATTCACATTCTTCGTCAGCGGATTCACGCGAAATTCTTGATAAGTCGCGTT 291
                      ***     *  * ** * ** * *  **  ***      * **   **   *     ***

consensus_5866#1      ACCCTTCCAACACGTAGGACCTTGCAT-CCTTTACATGATAGT-AATATTGCG-GTTCTT 385
consensus_5866#2      ACCCTTCCAACACGTAGGACCTTGCAT-CCTTTACATGATAGT-AATATTGCG-GTTCTT 217
consensus_5866#0      TTCACTTTGACGATCACTTGCTGATATGCTTTTGAACAACCGTCGATATGATATGATCCA 351
                        *  *   **    *    **   ** * ***  *  *  **  ****     * **  

consensus_5866#1      AAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGCGAGGTTCACGGCCTCTA 445
consensus_5866#2      AAAATAACATTATTCTACCTCTCGCAGCATTACTGTCTTTCGTGAGGTTCACGGCCTCTA 277
consensus_5866#0      GAAACTGTACATTTGCATCTTACACAGCCCTTTGATAAACTCTCAACCATGTG---TTGG 408
                       ***    *   **  * **  * ****  *    *        *       *   *   

consensus_5866#1      CTGTTTCATCTGCTTTGGAAATAGGCTCCAC---AGCGTCCCACAGATCCTCGAGTCTCT 502
consensus_5866#2      CTGTTTCATCTGCTTTGGAAATAGGCTCCAC---AGCGTCC---------TCGA-TCTCT 324
consensus_5866#0      ATAATTCACTTTCTTCGTCAGCAGATTTTAGCGAAGCGTCCC--------TTTTTCCGCT 460
                       *  ****  * *** *  *  **  *  *    *******         *     * **

consensus_5866#1      AGAAAGATTTCCTACAAATTTCCACGT-TGATCGTTGACCGACTAGTCGTTCGATATCGG 561
consensus_5866#2      AGAAAGATTTCCTACAAATTTCCACGT-TGATCGTTGACCGACTAGTCGTTCGATACCGG 383
consensus_5866#0      CACTTCGTCGTTTACTATTTGTCACATATGATCATTTCCATATGATCAGTTTGAGTCCAT 520
                             *    *** * **  *** * ***** **  *  *  *   *** **   *  

consensus_5866#1      TGCTACGATTCCCAAACAATTTGATACGTTAATAATTATACCAGTACCATTCCAAAATTA 621
consensus_5866#2      TGCT-CGATTCCCACCCAAATTGATACGTTAACAATTATACCAGTACCATTCCAAAATTA 442
consensus_5866#0      TTCCTCGAAATGCGCTTCTGCTG-CATGTCCCTCATCTGACTTGCTCCTTGCAAATTTTT 579
                      * *  ***    *        **  * **     **   **  *  ** * * **  ** 

consensus_5866#1      TATACAACCGA------------------------------------------------- 632
consensus_5866#2      TATACACCCGAAATAATCTCCTTAATTTCAGCACGTTTAATATATTAATCTGAAAAAAAA 502
consensus_5866#0      TAAAGATGTGGN-CAATTTTGTTACCCTTCCAACACGTAGGACCTTGCATCCCTTTACAT 638
                      ** * *   *                                                  

consensus_5866#1      ------------------------------------------------------------
consensus_5866#2      AACAACATGTATATTAATATTAAAACCAAGTTCAGTTTCGCTTCTTCTCAATATCAAAGC 562
consensus_5866#0      GATAGTAATATTGCGGGTCTTAAAATAACATT--ATTCTACCTCT--------------- 681
                                                                                  

consensus_5866#1      -------------
consensus_5866#2      TCCTGTACGACAT 575
consensus_5866#0      -------------