These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 708 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCG-GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC-GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAGGAGCAGCAG] [+] EMBL BM647017 [CCGCCCACGCGTCCGCCCACGCGTCCG GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAGGAGCAGCAG] [+] EMBL BM656899 [ CCGTGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTC GGAAAAGAGTTTGCACCTAGAACTGATGTAATAATAGAG ] [+] EMBL BM624935 [ CCG GAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACAAAATGCACAACGGCGCTACTAGTCTAGCTGCAAAGGTCGGGAAAAGAGTTTGCACCTAGAACT ] consensusID : consensus_5883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGGTCATCTAATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGGTCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA] [+] EMBL BM644181 [CCGGTCATCTAATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTGAGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAAGCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAACACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGATCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGATTCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACTGTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCGAGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAGGGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACCTCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCACCATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGGTCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5883#0 CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAATCATAACTAGTTTCGAGTGTACATGTG 60 consensus_5883#1 --------CCGGTCATCTA-ATGTCATGAAGAATCATAACTAGTTTCGAGTGTACATGTG 51 ** * * * *** ********************************* consensus_5883#0 AGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGTTCTAGAA 120 consensus_5883#1 AGTGTGTGAGTGTGTGCGTTTGTAAGTTAACCAGAGAGAAAGAGTAGTAGTGGTCTAGAA 111 **************************************************** ******* consensus_5883#0 GCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAA 180 consensus_5883#1 GCTAGCCTGACCATCCCTATCGAACTCCACCCATCAACGCTACCAATAACTCCACCGAAA 171 ************************************************************ consensus_5883#0 CACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGA 240 consensus_5883#1 CACCAACTCTGGTGTACCAAAACATCTCCAAAACCGTGCAATAGTGTACATGCCCCCCGA 231 ************************************************************ consensus_5883#0 TCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGAT 300 consensus_5883#1 TCCCCCTTTTCCCGTACGAGCAATTCCAGACCGAAACCCTCCGATCGAGCTTTGAATGAT 291 ************************************************************ consensus_5883#0 TCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACT 360 consensus_5883#1 TCTATCCGATCACGACCCGCAAGCCGACAGCACACATCGTTCAAGATAGCACCAGAAACT 351 ************************************************************ consensus_5883#0 GTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCG 420 consensus_5883#1 GTCCGGAACAGTGCGAGAAGACCCGTGTTACCCAGCGAAAGGGGAAAAGCAACGAGAGCG 411 ************************************************************ consensus_5883#0 AGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAG 480 consensus_5883#1 AGAGCCCTAAGAAGCCCGGCACCACCGGTTCGAAGGACACCTCGGCAGGCGATGGCGAAG 471 ************************************************************ consensus_5883#0 GGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACC 540 consensus_5883#1 GGTGCAAAAAGGAAGACCAAATGGGTGTCCTTGTCGCTGGCCAACGCAAACACCAAAACC 531 ************************************************************ consensus_5883#0 TCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCAC 600 consensus_5883#1 TCGAATGCGACCGGCTCGGATAGCGAACAGACGCAGGTCCACCACCACCAGCAACAGCAC 591 ************************************************************ consensus_5883#0 CATGGAGAAGGACACAGGCAC-AAAATGCACAACGG-CGCTACTAGTCTAGCTGCAAAGG 658 consensus_5883#1 CATGGAGAAGGACACAGGCACCAAAATGCACAACGGGCGCTACTAGTCTAGCTGCAAAGG 651 ********************* ************** *********************** consensus_5883#0 TCGGAAAAGAGTTTGCACCTAGAA-CTGATGTAATAATAGAGGAGCAGCAG 708 consensus_5883#1 TCGGAAAAGAGTTTGCACCTAGAAACTGATGTAA----------------- 685 ************************ ********* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||