These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCCGGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGCCGCACGCTCGATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTGTTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT] [+] EMBL BM641515 [CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCCGGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGCCGCACGCTCGATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTGTTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTA ] [+] EMBL BM625739 [ ccgGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT] consensusID : consensus_5887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAAAGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTATGGATGAGTGTAGCACAGTACCAGAGGACTACGAGTTAGCAAACGGACTGGAGTCTCATTCCAGGTTCCTCACCACCAGAGGGAGGGTCTCTCCTACTTCATTTCGATGCGGCTCGCTTAAAGAAAACAAACCCAGATTATTCACAGTAGGCTGGTGCTAGTTGTGACAAGGAGATTTCCTTCTTACCCGTACTATGGCACCGTCGAAGCCTGCGTTTGCGTCTACCCAGTAGCTTCGTTAAACGCGCCCATTGCCGGTGATACGATTTNGGGCAGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAATCGATTCAGCTCANNCCGCACTAGAGCGCGGTGCACGTNTAAAGCATACACACACAGGAGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGTAAGGTTCCTAATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTNACACAGTAAGTTAGCGNANCGGTTA] [+] EMBL BX468370 [GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAAAGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTATGGATGAGTGTAGCACAGTACCAGAGGACTACGAGTTAGCAAACGGACTGGAGTCTCATTCCAGGTTCCTCACCACCAGAGGGAGGGTCTCTCCTACTTCATTTCGATGCGGCTCGCTTAAAGAAAACAAACCCAGATTATTCACAGTAGGCTGGTGCTAGTTGTGACAAGGAGATTTCCTTCTTACCCGTACTATGGCACCGTCGAAGCCTGCGTTTGCGTCTACCCAGTAGCTTCGTTAAACGCGCCCATTGCCGGTGATACGATTTNGGGCAGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAATCGATTCAGCTCANNCCGCACTAGAGCGCGGTGCACGTNTAAAGCATACACACACAGGAGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGTAAGGTTCCTAATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTNACACAGTAAGTTAGCGNANCGGTTA] consensusID : consensus_5887#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGGGCAGTAAAACCCTTCCACAGCATCACCCAGTTCACTGAATCGATTCACTCACCCGCACTAGAGCGCGGTGCACGTTAAAGCATACACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATTTATAAAGGCTACACATAAATAAATATACACATACGAAGTAAGTAAGTAAGTAAGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGTGGTCCCGATCACCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACTACACCACGCCGGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTGGGGTGTGAATAAGCGCTACCGAACCGTTGAGATTGTTGTATAAATAAAAAACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAATAGTGGATTCGAGGCGCAAAATGTGACAATGTTACGCACGCACATATTAGCTAGGAATTTTGTTAATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCGAATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCGGCACGCGGGAGAAATGGGTGCGAAATCACGGAACGGGCAAATA] [+] EMBL BM646157 [CCGGGCAGTAAAACCCTTCCACAGCATCACCCAGTTCACTGAATCGATTCACTCACCCGCACTAGAGCGCGGTGCACGTTAAAGCATACACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATTTATAAAGGCTACACATAAATAAATATACACATACGAAGTAAGTAAGTAAGTAAGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGTGGTCCCGATCACCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACTACACCACGCCGGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTGGGGTGTGAATAAGCGCTACCGAACCGTTGAGATTGTTGTATAAATAAAAAACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAATAGTGGATTCGAGGCGCAAAATGTGACAATGTTACGCACGCACATATTAGCTAGGAATTTTGTTAATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCGAATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCGGCACGCGGGAGAAATGGGTGCGAAATCACGGAACGGGCAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5887#0 CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCC 60 consensus_5887#1 ------------------------------------------------------------ consensus_5887#2 ------------------------------------------------------------ consensus_5887#0 GGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGC-CGCACGCTC 119 consensus_5887#1 ----------------------GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACC 38 consensus_5887#2 ----------------------------CCGGGCAGTAAAACCCTTCCAC-AGCATCACC 31 * ** * * * consensus_5887#0 GATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTG 179 consensus_5887#1 TGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCA-CACTGTCATCGTCTGTTCG--A 95 consensus_5887#2 CAGTTCACTGAATCGATTCACTCACCCGCACTAG--AGCGCGGTGCACGTTAAAGCATAC 89 * * * * * * * * consensus_5887#0 TTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTG 239 consensus_5887#1 TCGTCCGGGGGAATGAAAGAGCT-TGTATG-GATGAGTATTG---CGTGGTTGCGAACTG 150 consensus_5887#2 ACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATT 149 * * * *** * * * * * * * * consensus_5887#0 TTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTT 299 consensus_5887#1 TACAAAG--TAATATCAGTATGGA-TGAGTGTAGCACAGTACCAGAGGACTACGA--GTT 205 consensus_5887#2 TATAAAGGCTAC-----ACATAAA-TAAATATA-CACA-TACGAAGTAAGTAAGTAAGTA 201 * * ** * * * * * ** consensus_5887#0 ACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCA 359 consensus_5887#1 AGCAAACGGACTGGAGTCTCATTCCAGGTTCC-TCACCACCAGAGGGAGGGTCTCTCCTA 264 consensus_5887#2 AGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGT---------GGTCCCGATCA 252 * * * ** * * * * * consensus_5887#0 GTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAG-AAGCA 418 consensus_5887#1 CTTC-ATTTCGATGCGGCTCGCTTAA--AGAAAACAAACCCAGATTATTCACAGTAGGCT 321 consensus_5887#2 CCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACT-ACACCACGCC 311 * * * * * * * * * ** consensus_5887#0 GGCGC-AATTGTATAAAGTGAATACTCCATTCGA-GGGAACGGTGGGTTCGTAGTGAGAG 476 consensus_5887#1 GGTGCTAGTTGTGACAAGGAGATTTCCTTCTTAC-CCGTACTATGGCACCGTCG-----A 375 consensus_5887#2 GGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTG-----G 366 ** * * * * * * ** * * consensus_5887#0 GGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGA 536 consensus_5887#1 AGCCTGCGTTTGCGTCTA----CCCAGTAGCTTCGTTAAA-CGCGCCC-ATTGCCGGTGA 429 consensus_5887#2 GGTGTGAATAAGCGCT----------ACCGAACCGTTGAG-ATTGTTGTATAAATAAAAA 415 * * * *** * * consensus_5887#0 ACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAA-ACGGGTTGAACCTATGAGG 595 consensus_5887#1 TACGATTTNGGGC--AGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAAT 487 consensus_5887#2 ACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAA-TAGTGGATT 474 * * * * * * * * * ** consensus_5887#0 CCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCG 655 consensus_5887#1 CGATTCAGCTCANNCCGCACTAGAGCGCG---GTGCACGTNTAAAGCATACACACACAGG 544 consensus_5887#2 CGAGGCGCAAAATGTGACAATGTTACGCA----CGCACATATTAGCTAGGAATTT-TGTT 529 * * * * * * * * consensus_5887#0 TGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGT 715 consensus_5887#1 AGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGT 604 consensus_5887#2 AATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCG 589 ** * * ** * * consensus_5887#0 CATCGTCT-------GTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATT 768 consensus_5887#1 AAGGTTCCTA-----ATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTN 659 consensus_5887#2 AATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCG-GCACGCGGGAGAAAT 648 * * * * * * * * * *** consensus_5887#0 GCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT 803 consensus_5887#1 ACACAGTAAGTTAGCGNANCGGTTA---------- 684 consensus_5887#2 GGGTGCGAAATCACGGAACGGGCAAATA------- 676 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||