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Anopheles gambiae
cluster # 5888 cluster # 5888       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5888#0 length = 1174 sequences # 2  
consensus_5888#1 length = 651 sequences # 1  
consensus_5888#2 length = 400 sequences # 1  

consensusID : consensus_5888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1174
fasta sequence
                              [CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC]

[+] EMBL BM626568             [CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM648922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ccgGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATGTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC]


>consensus_5888#0 CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATA GGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAG TTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGA GAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCT CTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATAC ATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAA ACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCA CTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCAC TTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCT ATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAG GTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATCAGGGGAAAAG AGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAAC CCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACC TCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTG ACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTT GTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGAT GACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGC ACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAG GTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTG TTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC



consensusID : consensus_5888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence
                              [GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC]

[+] EMBL BX467614             [GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC]


>consensus_5888#1 GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATG AGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTA GAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGT TCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAA GGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCG GAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCG ACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAG ATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGA ACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGT GGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGA GTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC



consensusID : consensus_5888#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence
                              [AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT]

[+] EMBL BX617418             [AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT]


>consensus_5888#2 AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCA CACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCA CGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTT CCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGC AGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTT TGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACA GTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATA 60
                                                                                  

consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      GGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAG 120
                                                                                  

consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      TTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGA 180
                                                                                  

consensus_5888#1      --------------------------------------------------GAGGCAGAAT 10
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      GAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCT 240
                                                                                  

consensus_5888#1      CCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGA-GATGTAGC 69
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      CTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATAC 300
                                                                                  

consensus_5888#1      AAAAATAGA-ATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGAC 128
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      ATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAA 360
                                                                                  

consensus_5888#1      AAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGG 188
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      ACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCA 420
                                                                                  

consensus_5888#1      CAAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 244
consensus_5888#2      -AAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 55
consensus_5888#0      CTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCAC 480
                         *    *  ** * * *  *    * *  ** *  **    *  * *  *  *   **

consensus_5888#1      TTTC-----ACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 299
consensus_5888#2      TTTC-----ACACCACTTGCTGG-TGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 109
consensus_5888#0      TTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATT--CATTTTTTTAAACTTCTTTT 538
                      ****       * ** **    * *  * * ** *  *  **    *  * *  **    

consensus_5888#1      GGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTA-ATATGTGG-TGTCTGTGTGTA 357
consensus_5888#2      GGAAACCTTCACGAGTGATTAGAACAGATTTTTGC-TA-ATATGTGG-TGTCTGTGTGTA 166
consensus_5888#0      CTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTG 598
                        *    *     *   *  * **   *   ****     * ** *  **  ****  * 

consensus_5888#1      GCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTA 417
consensus_5888#2      GCGACAGTTGCTTTCCATAT-CCGGCTGTTCCGGCCTCAG-CTTGGCTGACTTGGCTGTA 224
consensus_5888#0      AGGTCTTTTGCTGTGTGTGTTTTGTTTGTTT-GGTTTGATTTCTCGATCGATCAGGGGAA 657
                        * *  ***** *   * *   *  ****  **  * *    * * *   *  *  * *

consensus_5888#1      GAGATGGAGACAGAGCA------------GAGGTCAGTTTAGATTTGCGAT----CATTC 461
consensus_5888#2      GAGATGGAGACAGAGCA------------GAG-TCAGTTTAGATTTGC-AT----CATTC 266
consensus_5888#0      AAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCC 717
                       *** * **  ****              * *  ** ***   ***   *     * * *

consensus_5888#1      ACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGG--ATAGGAT 519
consensus_5888#2      ACCGT-TTTGCTACTAG-AACAAAACCC-ATCACTTTTGCT-AC-TCTAG---ATAGGAT 318
consensus_5888#0      AACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGT 777
                      * *   *** *  * *   ***  * *   ** **    *   *   **    * **  *

consensus_5888#1      ACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGA 579
consensus_5888#2      ACCAAG--AGGTTTT-----TTTGTATATTGT-CAACATGGTCACTCACAG--TTACG-- 366
consensus_5888#0      ACCTCCCCACCCCCCG--CTCCTACCCCAGAAACGAAACAGCCAACGGTGGA-TTATTGA 834
                      ***     *                        * * *  * **      *  ***    

consensus_5888#1      ATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTG 639
consensus_5888#2      ATTACGTT--GATGATA-TGA-TCAC--AGAAGATCCA-GT------------------- 400
consensus_5888#0      TTTCTGACT-TATGACGTTAA-TTGGATGAAGAAAACAAAGGATACGAAACACGAAAATG 892
                       **  *      ***   * * *       *  *  **                      

consensus_5888#1      ATCGTACNATTC------------------------------------------------ 651
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      GTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGA 952
                                                                                  

consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      ATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGA 1012
                                                                                  

consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      GAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTC 1072
                                                                                  

consensus_5888#1      ------------------------------------------------------------
consensus_5888#2      ------------------------------------------------------------
consensus_5888#0      ACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGT 1132
                                                                                  

consensus_5888#1      ------------------------------------------
consensus_5888#2      ------------------------------------------
consensus_5888#0      TGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC 1174
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)