These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 808 fasta sequence [CCGCCCACGCGTCCGAACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACACTGTTGGCCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCAT] [+] EMBL BM651822 [CCGCCCACGCGTCCGAACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACACTGTTGGCCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTG ] [+] EMBL BX616528 [ GGCCCAGCGTCGCCTAACCCTGCCAGATCCCCGAAGCTGCGCCAACCGTGTACGACATGCGACGTACCGTGATGCTCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCGCCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGTAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGG ] [+] EMBL BM649270 [ ccgCCGTGATGCCCGCGGAGTAGCGCATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCGATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGGAGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTGGGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACGGCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGCCCGACCACGCAGCGCAACACTGGCGACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCAT] consensusID : consensus_5901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCATTCGTTAGTGCAGTAGCGAGACACGTTACTGCATTTTTGTGTGTATGAATCGCTCAAGAGAAAGGGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGATCAGTTGATTGGTTTCGTTTCGATCTGTAACGTACAAGCCAGCAAACGCCACCTTCCCTGAGTAACTGAGTAATGCGACTAAAATGCTACTAAAGCAGCACAACGCACCACCGCAGCAGTTTCGGAGCCGGCCAAGGCAGTTTGTTCGGTCGGGCCAAGCGTTGTATGGGCTTCGTGTGTGTGTGTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCTGTTTAATTTCTATTTATTGTA] [+] EMBL BM631413 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGGACAACCGTGAGGCGGCTCAGGGTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGCACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGAACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCGCATCCCTTGCACACCGGAACAGAAAACATCATTCGTTAGTGCAGTAGCGAGACACGTTACTGCATTTTTGTGTGTATGAATCGCTCAAGAGAAAGGGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGATCAGTTGATTGGTTTCGTTTCGATCTGTAACGTACAAGCCAGCAAACGCCACCTTCCCTGAGTAACTGAGTAATGCGACTAAAATGCTACTAAAGCAGCACAACGCACCACCGCAGCAGTTTCGGAGCCGGCCAAGGCAGTTTGTTCGGTCGGGCCAAGCGTTGTATGGGCTTCGTGTGTGTGTGTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCTGTTTAATTTCTATTTATTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5901#0 CCGCCCACGCGTCCGA--ACAAAACAAACTACCGCCATGTCTGTACTGCGGACACTGACA 58 consensus_5901#1 CCGCCCACGCGTCCGCCCACGCGTCCGGCAACCGG-ACAACCGTGAGGCGGCTCAGGGTA 59 *************** ** * * **** * * ** **** * * consensus_5901#0 CTGTTGG-CCATCGGTGCCACTGTCGTGCTGGCCCAGCGTCGCCTAGCCCTGCCAGATCC 117 consensus_5901#1 ACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGG---C 116 * ** * * ** * * * * * * ** ** * * consensus_5901#0 CCGAAGCTGCGC-CAACCGTGTACGACATGCGACGTACCGTGATGCCCGCGGAGTAGCGC 176 consensus_5901#1 ACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGA 176 *** * *** *** * * * ** * *** * ** * * consensus_5901#0 ATTCGTACTTCTTCAGCTGGGAACACGCACCGACCCGCAGCCTGGAGGTTGACTGGCTCG 236 consensus_5901#1 ACTTTGTTCGCTCCCGC--AACCCGGGCATCCGTCTGTA-----AGGATGGAGTGTCTCG 229 * * ** * ** * *** * * * * * * ** ** **** consensus_5901#0 ATGCCCGTAACATCTGCCGACGACACTGCATGGATGCCGTCTCGATGGAGACGCCCCAGG 296 consensus_5901#1 CAGT--GGAATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACAC-ATG 286 * * ** * * * * ** **** ** **** * ** * * * * consensus_5901#0 AGAACGAGTTCATCAAGCAGCGCATCGCCCGTGGCAACGTTCGCTACATCTGGACGTCTG 356 consensus_5901#1 AGAAGATGCGCATCCC-TTGCACACCGGAACAGAAAACAT------CATTCGTTAGTGCA 339 **** * **** ** ** ** * *** * *** * ** consensus_5901#0 GGCGCAAGTGTAACTTTGCCGGATGCGATCGTCCGGATCTGCAGCCCCCGAACGAGAACG 416 consensus_5901#1 GTAGCGAGAC--ACGTTACTGCAT----TTTTGTGTGTATGAATCGCTCAA--GAGAAAG 391 * ** ** ** ** * * ** * * * * ** * * * * * ***** * consensus_5901#0 GCTGGTTCTGGTCCGGCTCGGGCGTCAAGATTGGACCGACCACGCAGCGCAACACTGGCG 476 consensus_5901#1 GGAAAGAGAGATGAAGGTTCAGCATTACTATTCCACCGTCGATCGGGAATGAT-CAGTTG 450 * * * * * ** * * *** **** * * * * * * * consensus_5901#0 ACTGGAGCTACACCGGCGGATACGGCCAACAGCAACCGGACAACCGTGAGGCGGCTCAGG 536 consensus_5901#1 ATTGGTTTCGTTTCGATCTGTAACGT-----ACAAGCCAGCAAACGCCAC-CTTCCCTGA 504 * *** ** ** * *** * *** ** * * * * * consensus_5901#0 GTAACGATGAATCGTGCCTGTCGATCCTGAACAACTTCTACAACGATGGGCTGAAGTGGC 596 consensus_5901#1 GTAAC--TGAGTAATGC-----GA--CTAAAATGCTACTAAAGCAGCACAACGCACCACC 555 ***** *** * *** ** ** ** ** *** * * * * * consensus_5901#0 ACGACGTTGCCTGTCACCATCTGAAGCCGTTCGTGTGCGAAGATTCGGACGAGCTGCTGA 656 consensus_5901#1 GCAGCAGT-TTCGGAGCCGGCCAAGGCAGTTTGTTCGG------TCGGGCCAAGCGTTGT 608 * * * * ** * * ** *** ** * **** * * * ** consensus_5901#0 ACTTTGTTCGCTCCCGCAACCCGGGCATCCGTCTGTAAGGATGGAGTGTCTCGCAGTGGA 716 consensus_5901#1 ATGGGCTTCGTGTGTGTGT----GTTTTTTTTATGTAGATCTGTTTTGTATTGCAACTCT 664 * **** * * * * **** ** *** * *** consensus_5901#0 ATTTGGACTCGTGTGAGTGTGATGATGACGCGTCGACACACACACACATGAGAAGATGCG 776 consensus_5901#1 GTTTAATTTCTATTTATTGTA--------------------------------------- 685 *** ** * * *** consensus_5901#0 CATCCCTTGCACACCGGAACAGAAAACATCAT 808 consensus_5901#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||