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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 947 fasta sequence
[CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATATCGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGACCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCACGGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA]
[+] EMBL BM655480 [CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATATCGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGACCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCACGGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCAT ]
[+] EMBL BM641125 [ ccGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGGGGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTC ]
[+] EMBL BM631688 [ ccgGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA]
consensusID : consensus_5903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[GTACCACGAATCCTTCAACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTTTTCCGTTAGCAAACGCAGTGGCAAAGGTTTTGGAATTTAAAATTTTCGATGTAAAAGTTAAGCGTCGACATGTTCTCGTTCACCGTTTCAGTACAAAACTCTCCTTTCTCGATCGATGTTTATCGTCCGTGTGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGATGAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAATGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATGAACGAAATCAACTTAATAATTAATTCACGCATAAAGCGGAATACGTACGGAAATTAGACGCTTCAATGCCACATGCAGTGGGCATCCGGAGCTTAACAATATGTAACCACTTGAGAATAAATTTACCAA]
[+] EMBL BX615358 [GTACCACGAATCCTTCAACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTTTTCCGTTAGCAAACGCAGTGGCAAAGGTTTTGGAATTTAAAATTTTCGATGTAAAAGTTAAGCGTCGACATGTTCTCGTTCACCGTTTCAGTACAAAACTCTCCTTTCTCGATCGATGTTTATCGTCCGTGTGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGATGAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAATGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATGAACGAAATCAACTTAATAATTAATTCACGCATAAAGCGGAATACGTACGGAAATTAGACGCTTCAATGCCACATGCAGTGGGCATCCGGAGCTTAACAATATGTAACCACTTGAGAATAAATTTACCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5903#0 CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATAT 60
consensus_5903#1 ------------------------------------------------------------
consensus_5903#0 CGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGA 120
consensus_5903#1 ------------------------------------------------------------
consensus_5903#0 CCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCAC 180
consensus_5903#1 ------------------------------------------------------------
consensus_5903#0 GGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGA 240
consensus_5903#1 ------------------------------------------------------------
consensus_5903#0 TGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGT 300
consensus_5903#1 -------------------------------------------GTACCACGAATCCTTCA 17
* * * ** *
consensus_5903#0 CCCACCTGCAGC-CCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCC 359
consensus_5903#1 ACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATA-CAGATTC 76
* * ** * * * * * * * * * * * ** * * *** * *
consensus_5903#0 CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAA 419
consensus_5903#1 --GGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGT---CCCCTGTTTTCCGTTAGCAAA 131
* * ** * ***** * * * * ** * * * * ** **
consensus_5903#0 CCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAAT 479
consensus_5903#1 CGCAGTGGCAAAGGTT---TTGGAATTT-----AAAATTTTCGATGTAAA--AGTTAAGC 181
* * *** * * ***** * *** ** *** * *
consensus_5903#0 TTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAAT 539
consensus_5903#1 GTCGACATGTTCTCGTTCACCGTTT---CAGTACAAAACTCTC---CTTTCTCGATCGAT 235
* ** ** * ** * * * * * ** *** * *** *** **
consensus_5903#0 GCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTG-C 598
consensus_5903#1 GTTTATCGTCCGTG-TGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGAT 294
* ** * * * * ** ** * * ** * * * **** *
consensus_5903#0 GAAGAACGAGGGGATTGTTTTTCGCATC-TCACTCAACTCAACTCCACTTA-AACGTGAA 656
consensus_5903#1 GAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAA 354
** **** * *** ** *** * * ** * * ** * * ** * **
consensus_5903#0 TCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCA 716
consensus_5903#1 TGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATG-AACGAAATCAACTTA 413
* **** * * ** **** ** * **** ** * ** ** * *
consensus_5903#0 CCAGTT--TTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCG 774
consensus_5903#1 ATAATTAATTCACG-CATAAAGCGGAATACGTAC--GGAAATTA--GACGCTTCAATGC- 467
* ** ** * * *** * * * * * * * * * * * ****
consensus_5903#0 CGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAA 834
consensus_5903#1 CACATGCAGTGGGCATCCGGAGCTT--AACAATATGTAACCACT----------TGAGAA 515
* ** * * * ** * * * ****** * ** ** * ** **
consensus_5903#0 CCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGT 894
consensus_5903#1 TAAATTTACCAA------------------------------------------------ 527
*** * *
consensus_5903#0 TAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA 947
consensus_5903#1 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||