These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence [ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGAGTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGGATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGCGTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAACCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCCTATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAA-CACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTTCTACTCGGGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGACCATGAACGCGCAGTCGGAATGCTCCA-GGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGC-TTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAA-CGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGAATCCCACGCGTCCGCCCACGCGTCCGCGG] [+] EMBL CNS09BVB [ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGAGTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGGATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGCGTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAACCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCCTATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAAGCACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTTCTACTCGGGGGCG ] [+] EMBL CNS08O52 [ ATGTACAAA AACTATCTTCCATCTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGGGAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATTCCGACCTCCTCGTAGTCCTTCTCGAGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGACCATGAACGCGCAGTCGGAATGCTCCA GGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGC TTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAA CGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGA ] [-] EMBL BM575675 [ GGCCTCGTTGTCGACCATGAACGCGCAGTCGGAATGCTCCAGGGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGGCTCGACCACGGCAGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGCTTTCGACTTCTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGGGAGGTGAAACCGGATCCGGTACCGCCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTGCGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGGCGTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGGCGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCACGGGGCACGTGCTTGCCTGCGCCAGTCTCGGAGAAGAAGGTGTTGAACGAATCCCACGCGTCCGCCCACGCGTCCGCGG] consensusID : consensus_5909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [CCGGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCC] [+] EMBL BM647165 [CCGGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5909#0 ATGTTGAAAACTAGTATGTGCGTGGTTATGTGGTCATTTAGAACGTTAACAGAAAAATGA 60 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 GTTTCGTTATGAAATCCTAAGGATTTTGGAAAAATGTTGACACATTTCACAAACTAATGG 120 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 ATTTTTCGGACACTAAGAAACGGAATGGCCCCATTTAACTTTTAAACCCTTCGTAAAAGC 180 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 GTTAAAGAACATTTCACACTAACGTAAATAAACTTAATTACTTGTAATTTTCCGTATGAA 240 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CCGCATTTTAGTGCAATACCACCACTATTGGTACTACCACCACTATAGGTACATTTACCC 300 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 TATTTCCTCATTTTTGAGTGAAGGAAGAATTACGAAGAATGTACAAACACTATCTTCCAT 360 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CTTCCTTCAAATGTTGTTGCTGATGCTGCTGTTGCTTGTTGCTGCTGCTGCTGCTACTGG 420 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 GAAAGTACCTTTGTTTAGTACTCCTCAGCGCCTTCGCCCTCACCCTCGCCGGAGTCCATT 480 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CCGACCTCCTCGTAGTTCTACTCGGGGGCGGCAGATGTCGTAGATGGCCTCGTCGTCGAC 540 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CATGAACGCGCAGTCGGAATGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTACGG 600 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CTCGACCACGGCCGTCGACACCTGCGGGGCCGGGTAGATGGCGAACTCGAGCTTCGACTT 660 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CTTGCCATAGTCCACCGACAGGCGCTCCATCAGCAGAGAGGTGAAACGGATCCGGTACCG 720 consensus_5909#1 ------------------------------------------------------------ consensus_5909#0 CCGCCGAACGAGTGGAAGATCAGGAAGCCCTGCAGGCCCGTGCACTGATCGGCCAGCTTG 780 consensus_5909#1 -----------------------------CCGGGAAGTCACTCACAGAGAGATATGGTTG 31 * * * *** ** * * *** consensus_5909#0 --CGGATGCGGTCCAGCACAACATCGACGATTTCCTTTCCGATCGTGTAGTGTCCGCGGG 838 consensus_5909#1 GACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGAT---GCACTCTTCTTGGA 88 * * * *** ***** * * * * * ** * **** * * * * * ** consensus_5909#0 C-GTAGTTGTTGGCGGCATCTTCCTTGCCGGTGATCAGCTGCTCCGGGTGGAACAGCTGG 897 consensus_5909#1 CCGTGAAAATCGAAGAC-----TGGGGCCAG-GACAAGTTCACCGAGGACGA--GGTTGA 140 * ** * * * * *** * ** ** * * ** ** * ** consensus_5909#0 CGGTACGTGCCGGTGCGCACCTCATCGACGACGGTCGGCTCCAGATCGACGAACACGGCA 957 consensus_5909#1 CGATGCAT-TCGAT---CAGATGGTCATTGACGATAAGGGCTACATCGAC-ACTGCTGCT 195 ** * * * ** * ** * ** **** * * * * ****** * * ** consensus_5909#0 CGGGGCA-CGTCCTTTCCTGCCCCAGTTTCGGAGAAGAAGGTGTTGAACGAATCCCACGC 1016 consensus_5909#1 CTGATCGGCATGCT------CACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAA 249 * * * * * ** * ** * * ** ** * ** * *** *** * consensus_5909#0 GTCCGCCCACGCGTCCGCGG 1036 consensus_5909#1 TTAAAAGCC----------- 258 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||