These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCATGTTCAACATGGTCGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCGAAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTA] [+] EMBL BM633477 [CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCATGTTCAACATGGTCGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCGAAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGAACGACAAGAAGCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGTGTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAAGACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCTGTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTA] consensusID : consensus_5915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 619 fasta sequence [ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTA-AAGTGAGT--TTTCTCTTTTCCTTCG-GAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTGCCATCGGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACCCCACCACATCACCCTTCCGGCATATGT] [-] EMBL BX613328 [ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTA AAGTGAGT TTTCTCTTTTCCTTCG GAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTGCCATCGGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACCCCACCACATCACCCTTCCGGCATATGT] [+] EMBL AGA282378 [ AGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCAGTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTACGTAATAAACGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAATGTTGTAT ] [-] EMBL BX619409 [ ATTAGGCCCTGTTTTGTATGCGTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGAATTTGAATTTCATTTGTCTGTTTTACCGGTTGGCGAAACACGTTCAACTTGCTCTCTGCCTATTTCACACACTCCACCTAAACAGCATATATGTAATTACGTATAGCTTTGAATAACGAATAGAAGTTTAATGTTGTATGTGACATTCAGTATAGCTCGTGTATGGTTTTCGATATGCTTGGGAATTTCTACACAACGTGGTGTGTGCATTTTTAGGCGCTTTTTTATAAGTGAGTGCATTCTCTTTTCCTTCGAGAACATTCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCGGTCACACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5915#0 CCGCGGACGCGTGGGTGAGCGCCGCACTGGGCATGGCGAACGTTAAGGCGCGCGGCATCA 60 consensus_5915#1 --------------ATAAGGGTGTTTCTTCTCACTTGGCTTTTTAAGACGATCGTTACCA 46 * ** * ** ** * ***** ** ** * ** consensus_5915#0 TGTTCAACATGGT-CGCTCCGCTCAAGAGCGTCGGACTCACGAACACCAAGGACCAGTCG 119 consensus_5915#1 GTTAAAACATGGCGCGGTCTCCTAAATATGGTGCAAAAAGTTTAATTCTAGCGCTAGCTA 106 * ******* ** ** ** ** * ** * * * ** * ** consensus_5915#0 AAGGTCAAATCGATTGTTGGCTTTAACGAGCGCGTCGTGTACCACATGA-ACGACAAGAA 178 consensus_5915#1 CGTAATAAA-CGGCCCTAAATTTGAACGATCGCTGAACGTGCTACACATTAGGCCCTGTT 165 *** ** * ** ***** *** ** * *** * * * * consensus_5915#0 GCGCACCCTGGGTTCGGCCGAGATGAAGAAGTCGCTCAAGTACGACGATGTGGTCGCCGT 238 consensus_5915#1 TTGTATGC-GTGTATGTGTGATCTTAACAGGATGCGAGCATACGATAACATTGCAATTGA 224 * * * * ** * ** * ** * * ** ***** * * * * consensus_5915#0 GTCCGCCGTCGAGCGGTTCGGCGGCAACTTCTTCGTGCTGCAGAACTACGCCCAGCAGAA 298 consensus_5915#1 ATTTGAATTTCATTTGTCTG--------TTTTACCGGTTGGCGAAACACGTTCAACT--- 273 * * * * ** * ** * * * ** *** *** ** * consensus_5915#0 GACGCCGAAGGACAAGAAGCAGTACATCTCGATCGTGGCGGCCGTGCTGGCCGACCAGCT 358 consensus_5915#1 --TGCT-----------CTCTGCCTATTTCACACACTCCACCTAAAC-AGCATATATGTA 319 ** * * ** ** * * * * ** * * consensus_5915#0 GTCCCGCACGGAGACGACGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGA 418 consensus_5915#1 ATTACGTATAGCTTTGAATAACGAAAAGAAGTTTAAT----GTTGTATGTGACATTCAGT 375 * ** * * ** ***** * ** * ** * *** * * consensus_5915#0 ATCGCTC-TGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTG 477 consensus_5915#1 ATAGCTCGTGTATGGTTTTCGATATGC-----TTGGGAATTTCTACACAACGTGGTG-TG 429 ** **** ** * * * *** **** ** * * * ** **** ** consensus_5915#0 CCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAA 537 consensus_5915#1 TGCATTTTTAGGCGCTTTTTTAAAGTGAGTTTTC-------TCTTTTCCTTCGG-AACAT 481 * ** * ** * * * * * *** * *** ** * consensus_5915#0 AGCGAAACAGTGTGC-ACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTG 596 consensus_5915#1 TCCGCTGCCTTTCGCTACGCTTTTAACATGCCGTTTTCTCTATGTTCCGTCACACCTTTG 541 ** * * ** ** * * ** ** * * * * * ** consensus_5915#0 CAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATAC 656 consensus_5915#1 CCATC---GGTCTCTACCCAAAAACATCTCAGTCTCAGTTTCAAAACGGAGACC--CCAC 596 * ** ** * * * ** * ** * * **** * ** consensus_5915#0 GAAATAGACGTACTACAAGGCATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGAT 716 consensus_5915#1 CACATCACCCTTCC----GGCATATGT--------------------------------- 619 * ** * * * ***** * * consensus_5915#0 CGTA 720 consensus_5915#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||