|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTTGAAAAAGAGTGGACGTGTTGGTCGAACGAACTTTCCCTCGTCGCCCGTGCAGCAGCAGCAAAACGCGTGCTCCTTCCTCGTAACCTTACTTCGAGTCAGCGTTATTACCAGCAGCCAAAATGGTGTACATGGTGAAAGATTCCGAGGACTTCAACAACAAGCTGGAAGCGGCCGGCGACCAGCTCGTCGTGGTCGATTTCTTCGCCACCTGGTGCGGCCCGTGCAAGGTGATCGCCCCGAAGCTGGAGGAGTTCCAGAACAAGTACGCGGACAAGATCGTCGTGGTGAAGGTGGACGTGGACGAGTGCGAGGAGCTGGCGGCCCAGTACAACATTGCCAGCATGCCCACCTTCCTGTTCATCAAGCGGAAGGAGGTGGTCGGCCAGTTCTCCGGCGCGAACGCGGAAAAGCTGGAAAACTTCATCCAGCAGCACTCGGCGTAAGGGGTGGTCGGCGGGAGCGAGAGGCGCAGTGGCTGCGTGTGCTCTCGATTTGTTGTGTTGCGGGGCGGGAGACGCCGGACGGGCGACCAAGGAGCACAATTATACCAAGCAACACACACACACACACACATAGTAAACCCATAAGCATACATAGCGTAAAGTCGACATATACCAGCCCCGTGTCACAGGAGGATTC]
[+] EMBL BM580651 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTGAAAAAGAGTGGACGTGTTGGTCGAACGAACTTTCCCTCGTCGCCCGTGCAGCAGCAGCAAAACGCGTGCTCCTTCCTCGTAACCTTACTTCGAGTCAGCGTTATTACCAGCAGCCAAAATGGTGTACATGGTGAAAGATTCCGAGGACTTCAACAACAAGCTGGAAGCGGCCGGCGACCAGCTCGTCGTGGTCGATTTCTTCGCCACCTGGTGCGGCCCGTGCAAGGTGATCGCCCCGAAGCTGGAGGAGTTCCAGAACAAGTACGCGGACAAGATCGTCGTGGTGAAGGTGGACGTGGACGAGTGCGAGGAGCTGGCGGCCCAGTACAACATTGCCAGCATGCCCACCTTCCTGTTCATCAAGCGGAAGGAGGTGGTCGGCCAGTTCTCCGGCGCGAACGCGGAAAAGCTGGAAAACTTCATCCAGCAGCACTCGGCGTAAGGGGTGGTCGGCGGGAGCGAGAGGCGCAGTGGCTGCGTGTGCTCTCGATTTGTTGTGTTGCGGGGCGGGAGACGCCGGACGGGCGACCAAGGAGCACAATTATACCAAGCAACACACACACACACACACATAGTAAACCCATAAGCATACATAGCGTAAAGTCGACATATACCAGCCCCGTGTCACAGGAGGATTC]
consensusID : consensus_5921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[TGCAGCACCGGGTTAGGGGACGCGTGGCCGTGTGGTGGTGTTAATTAATGTGCATTTCTTTCTTTTCCGTTTCTTTCGTTCTTTACCCGGTGGTCAGGATATGGATGCGTCGACGGAAGATGTTTCGGAATCGTTCAAGGCCGAGTTTGCCGACAGTACGGACAGTGAGGAAAGCTTCACCGACGAATATGATTCCGATGAGGAGCTACGGCAAGCCTTCCTTCGCAACGAGCTGAAGCCGGGCTTGAACGTGATACTGAAGGAAGAGCGTCACCGATCAACGATACGATCAAGCTAAAGGCCGCCCTCGAAACCTGCACACTCAAAGCGCCCTGGCTCGAGCGGATGGATCTAGTGAACGATTTGGCCCCGCTCACGCCCGAGCTAGCGATCCAGATCGAGAAGCACGAGCAGAAGCGGGAAAACCTGTTCAAGGGCAACCGGAAGATACCGTACGTGAAGCCGGAGGTGATCACGGTGCTGAACGACTTCAAGCGCGAGATCCTGTTCCACCGGCAGGCGCAGGCGGCCACGCTCGAGGGCATCGGGCGGCTGCACGAGCTCGGCATCGCGACCAAGCGCCCGGACGACTACTTCGCCGAGATGGCCAAGACG]
[+] EMBL CNS08IXN [TGCAGCACCGGGTTAGGGGACGCGTGGCCGTGTGGTGGTGTTAATTAATGTGCATTTCTTTCTTTTCCGTTTCTTTCGTTCTTTACCCGGTGGTCAGGATATGGATGCGTCGACGGAAGATGTTTCGGAATCGTTCAAGGCCGAGTTTGCCGACAGTACGGACAGTGAGGAAAGCTTCACCGACGAATATGATTCCGATGAGGAGCTACGGCAAGCCTTCCTTCGCAACGAGCTGAAGCCGGGCTTGAACGTGATACTGAAGGAAGAGCGTCACCGATCAACGATACGATCAAGCTAAAGGCCGCCCTCGAAACCTGCACACTCAAAGCGCCCTGGCTCGAGCGGATGGATCTAGTGAACGATTTGGCCCCGCTCACGCCCGAGCTAGCGATCCAGATCGAGAAGCACGAGCAGAAGCGGGAAAACCTGTTCAAGGGCAACCGGAAGATACCGTACGTGAAGCCGGAGGTGATCACGGTGCTGAACGACTTCAAGCGCGAGATCCTGTTCCACCGGCAGGCGCAGGCGGCCACGCTCGAGGGCATCGGGCGGCTGCACGAGCTCGGCATCGCGACCAAGCGCCCGGACGACTACTTCGCCGAGATGGCCAAGACG]
consensusID : consensus_5921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[GTTGACTCAGCGCGATCGCGAACTAACGCGCAGTATATAACGCGAGAATCTTAGACTTTGAAATCACAGTTCGCCGCAGAACGCGAGAGCAACAGCAAAGGCAAAGTGCAAGTTGCGTTCTTAACCTATATCGGTCAACGGCAATATGGCTTCGAAGCTGTTCGTGTTAGCCTTCCTGTGCCTAGCATTGGTGGTGGTTGTGCAGGTCTGAATTAACACCTATCGACATAAGGTGATACCCGTAGCAAATAAATTGCGTGAATGCTTTCTTTTTCCCCTCCAGAGTGCACCGCAGTATGCACGCGGCGACGTGCCAACTTATGATGAGGAAGATTTTGATGAGGAATCGTTAAAGCCCCACTCCTCATCGTCAAGTGACGATGGTGAGGAAGAGTTTGATCCAAGTAAGAACCAATGATTATGGACGTTTATTATGAACGCTAGCCCACTAATGAACGTTCGTTTACAGGCCTTCTCGAGGAACACGCCGACGCTCCCA]
[+] EMBL BX610745 [GTTGACTCAGCGCGATCGCGAACTAACGCGCAGTATATAACGCGAGAATCTTAGACTTTGAAATCACAGTTCGCCGCAGAACGCGAGAGCAACAGCAAAGGCAAAGTGCAAGTTGCGTTCTTAACCTATATCGGTCAACGGCAATATGGCTTCGAAGCTGTTCGTGTTAGCCTTCCTGTGCCTAGCATTGGTGGTGGTTGTGCAGGTCTGAATTAACACCTATCGACATAAGGTGATACCCGTAGCAAATAAATTGCGTGAATGCTTTCTTTTTCCCCTCCAGAGTGCACCGCAGTATGCACGCGGCGACGTGCCAACTTATGATGAGGAAGATTTTGATGAGGAATCGTTAAAGCCCCACTCCTCATCGTCAAGTGACGATGGTGAGGAAGAGTTTGATCCAAGTAAGAACCAATGATTATGGACGTTTATTATGAACGCTAGCCCACTAATGAACGTTCGTTTACAGGCCTTCTCGAGGAACACGCCGACGCTCCCA]
consensusID : consensus_5921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[CCGCCCACGCGTCCGGGGACCCGTGCGCGAGGGCGACATCCTGACCCTGCTGGAGTCTGAACGTGAGGCAAGAAGACTCCGGTAAATTCGCTCCACTTCGCAACGCTTTTCCACGGACTGGACATTCCGGCACCTTCAGGTTATGTTTCCGTTCTGTATACGTCGCGGTGTGTGTACCACGGCGGGGATCCTCAACTAGCTGGCGACGATGACTCGTTGAAGAACTCATCCTTGTGCGGCTAAAATGAACATATGTCGGTGAAACTGCGCGTTCGTGGAAGAATGAGAAGTGCAAGCAAATAAATCGCGAGTTTGGAAAAACACCAG]
[+] EMBL BM634323 [CCGCCCACGCGTCCGGGGACCCGTGCGCGAGGGCGACATCCTGACCCTGCTGGAGTCTGAACGTGAGGCAAGAAGACTCCGGTAAATTCGCTCCACTTCGCAACGCTTTTCCACGGACTGGACATTCCGGCACCTTCAGGTTATGTTTCCGTTCTGTATACGTCGCGGTGTGTGTACCACGGCGGGGATCCTCAACTAGCTGGCGACGATGACTCGTTGAAGAACTCATCCTTGTGCGGCTAAAATGAACATATGTCGGTGAAACTGCGCGTTCGTGGAAGAATGAGAAGTGCAAGCAAATAAATCGCGAGTTTGGAAAAACACCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5921#1 ----TGCAGCACCGGGTTAGGGGACGCGTGGCCGTGTGGTGGTGTTAATTAATGTGCATT 56
consensus_5921#3 ------------------------------------------------------------
consensus_5921#2 ------------------------------------------------------------
consensus_5921#0 CCGCCCACGCGTCCGCCCACGCGTCCGCTTGAAAAAGAGTGGACGTGTTGGTCGAACGAA 60
consensus_5921#1 TCTTTCTTTTCCGTTTCTTTCGTTCTTTACCCGGTGGTCAGGATATGGATGCGTCGACGG 116
consensus_5921#3 --------------------------CCGCCCACGCGTCCGGGGACCCGTGCG-CGA-GG 32
consensus_5921#2 --------GTTGACTCAGCGCGATCGCGAACTAACGCGCAGTATATA-ACGCGAGAATCT 51
consensus_5921#0 CTTTCCCTCGTCGCCC-GTGCAGCAGCAGCAAAACGCGTGCTCCTTCCTCGTAACCTTAC 119
*
consensus_5921#1 AAGATGTTTCGG-AATCGTTCAAGGCCGAGTTTGCCGACAGTACGGACAGTGAGGAAAGC 175
consensus_5921#3 GCGACATCCTGA-CCCTGCTGGAGTCTGAACGTGAGGCAAGAAGACTCCGGTAAATTCGC 91
consensus_5921#2 TAGACTTTGAAATCACAGTTCGCCGCAGAACGCGAGAGCAACAGCAAAGGCAAAGTGCAA 111
consensus_5921#0 TTCGAGTCAGCGTTATTACCAGCAGCCAAAATGGTGTACATGGTGAAAGATTCCGAGGAC 179
* * * * *
consensus_5921#1 TTCAC-CGACGAATATGATTCCGATGAGGA----GCTACGGCAAGCCTTCC-TTCGCAAC 229
consensus_5921#3 TCCAC-TTCGCAACGCTTTTCCACGGACTG----GACATTCCGG---CACC-TTCAGGTT 142
consensus_5921#2 GTTGCGTTCTTAACCTATATCGGTCAACGGC---AATATGGCTTCGAAGCTGTTCGTGTT 168
consensus_5921#0 TTCAA-CAACAAGCTGGAAGCGGCCGGCGACCAGCTCGTCGTGGTCGATTTCTTCGCCAC 238
* * ***
consensus_5921#1 GAGCTGAAG-CCGGGCTTGAACGTGATACTGAAGGAAGAGCGTCACCGATCAACGATACG 288
consensus_5921#3 ATGTTTCCG-TTCTGTAT--ACGTCGCGGTGTGTGTACCACGGCGGGGATCCTCAACTAG 199
consensus_5921#2 AGCCTTC---CTGTGCCTAGCATTGGTGGTGGTTGTGCA--GGTCTGAATTAACACCTAT 223
consensus_5921#0 CTGGTGCGGCCCGTGCAAGGTGATCGCCCCGAAGCTGGAGGAGTTCCAG--AACAAGTAC 296
* * * * *
consensus_5921#1 ATCAAGCTAAAGGCCGCCCTCGAAACCTGCACACTCAAAGCGCCCTGGCTCGAGCGGATG 348
consensus_5921#3 CTGGCGACGATGAC--TCGTTGAAGAACTCATCCTT---GTGC---GGCTAAAATGAACA 251
consensus_5921#2 CGACATAAGGTGATACCCGTAGCAAATAAATTGCGTGA-ATGCTTTCTTTTTCCCCTCCA 282
consensus_5921#0 GCGGACAAGATCGTCGTGGTGAAGGTGGACGTGGACGA-GTGCGAGGAGCTGGCGGCCCA 355
* **
consensus_5921#1 G-ATCTAGTGAACGATTTGGCCCCGCTCACGCCCG---AGCTAGCGATCCAGATCGAGAA 404
consensus_5921#3 T-ATGTCGGTGAAACTGCG----CGTTCGTGGAAG---AATGAGAAGTGCAAGCAAATAA 303
consensus_5921#2 G-A-GTGCACCGCAGTATGCACGCGGCGACGTGCC---AACTTATGATG-AGGAAGATTT 336
consensus_5921#0 GTACAACATTGCCAGCATGCCCACCTTCCTGTTCATCAAGCGGAAGGAGGTGGTCGGCCA 415
* * * * *
consensus_5921#1 GCA------CGAGCAGAAGCGGGAAAACCTGTTCAAGGGCAACCGGAAGATACCGTACGT 458
consensus_5921#3 AT-------CGCGAGTTTGGAAAAACACCAG----------------------------- 327
consensus_5921#2 TGA------TGAGGAATCGTTAAAGCCCCACTCC-----TCATCGTCAAGTGACGATGGT 385
consensus_5921#0 GTTCTCCGGCGCGAACGCGGAAAAGCTGGAAAACTTCATCCAGCAGCACTCGGCGTAAGG 475
* * * *
consensus_5921#1 GAAGCCGGAGGTGATCACGGTGCTGAACGACTTCAAGCGCGAGATCCTGTTCCACCGGCA 518
consensus_5921#3 ------------------------------------------------------------
consensus_5921#2 GAGGAAGAGTTTGATCCAAGTAAGAACCAAT---GATTATGGACGTTTATTATGAACGCT 442
consensus_5921#0 GGTGGTCGGCGGGAGCGAGAGGCGCAGTGGCTGCGTGTGCTCTCGATTTGTTGTGTTGCG 535
consensus_5921#1 GGCGCAGGCGGCCACGCTCGAGGGCATCGGGCGGCTGCACGAGCTCGGCATCGCGACCAA 578
consensus_5921#3 ------------------------------------------------------------
consensus_5921#2 AGCCCACTAATGAACGTTCGTTTACA--GGCCTTCTCGAGGAACACGCCGACGCTCCCA- 499
consensus_5921#0 GG-GCGGGAGACGCCGGACGGGCGACCAAGGAGCACAATTATACCAAGCAACACACACAC 594
consensus_5921#1 GCGCCCGGACGACTACTTCGCCGAGATGGCCAAGACG----------------------- 615
consensus_5921#3 ------------------------------------------------------------
consensus_5921#2 ------------------------------------------------------------
consensus_5921#0 ACACACACATAGTAAACCCATAAGCATACATAGCGTAAAGTCGACATATACCAGCCCCGT 654
consensus_5921#1 ---------------
consensus_5921#3 ---------------
consensus_5921#2 ---------------
consensus_5921#0 GTCACAGGAGGATTC 669
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||