These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1086 fasta sequence [TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTAC-GAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTTCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAAACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTTATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGGTTCATGCCGGCGGGTCCATCGTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGATACACGTGCTGAATT] [+] EMBL CNS08TGL [TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTAC GAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTTCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAAACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTTATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGG ] [-] EMBL CNS08TGK [ TCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTACGGAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTCCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTCCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTCTTTCCGGTACCGGACTGAGCTTGTG GATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGACGGTTTCTCGAAACCGTATGCGTAAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTCATAAGACTCGCTATAGTTCGACTCGATGATGCCGTCTGGGTTCATGCCGGCGGGTCCATCGTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGATACACGTGCTGAATT] consensusID : consensus_5923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [AGCAGAATCGCCACGAGGTANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACGATTGCAATAATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCGCTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGTTGGTGGCGGCGGCTGCGACGGTGACCCGCGCCGAGGAGCAACCGAACCCCGTCACTGAAGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAGGAAGTACAGGCTAACAATCTAGGTGGCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCGACCACATCGAGCGCGTGCGTCTGGGATCTGGCTGGATCACGANAGTGGNAAGCATAGCCANACCTTCGAGATCCTAGTNTCGGCACNGTCCAGGTANTGGCGGAGCACCAATACACCGCTACGAGATNCANAGCCCCNAANNNGATAACCGAACCCAACNNCACNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACCACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN] [+] EMBL AL697079 [AGCAGAATCGCCACGAGGTANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACGATTGCAATAATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCGCTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGTTGGTGGCGGCGGCTGCGACGGTGACCCGCGCCGAGGAGCAACCGAACCCCGTCACTGAAGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAGGAAGTACAGGCTAACAATCTAGGTGGCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCGACCACATCGAGCGCGTGCGTCTGGGATCTGGCTGGATCACGANAGTGGNAAGCATAGCCANACCTTCGAGATCCTAGTNTCGGCACNGTCCAGGTANTGGCGGAGCACCAATACACCGCTACGAGATNCANAGCCCCNAANNNGATAACCGAACCCAACNNCACNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACCACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN] consensusID : consensus_5923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [CCGTACAAGTTTCAGATGTGTGCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGTGTGCGCAGGCGTTCAAGGTTCAATTGATCCTCAAGCACAAAGGTTCATACAACACCGCGGTTGAGGCGCGCCAAATTTGATGACATCTCCCCTCAGGCAAAAACCAAGCAGGCTGAACATGCGCACCACCAAACGGGCTCCAGCGCGGTGTGAAGAGAGAGGAAGAAGAGAAGACAGAATTGGAAACAGCCGCGCCAGTCTACCAACCACCGTGTGTGTGTATGTAAATATGTGAGAACACATGTGTGAATCCTCTTGTGGGAACTGCAAAAAGAAGAGAAATAAAGAGTGTGAAGCAGCTAGGCCACCGC] [+] EMBL BM617716 [CCGTACAAGTTTCAGATGTGTGCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGTGTGCGCAGGCGTTCAAGGTTCAATTGATCCTCAAGCACAAAGGTTCATACAACACCGCGGTTGAGGCGCGCCAAATTTGATGACATCTCCCCTCAGGCAAAAACCAAGCAGGCTGAACATGCGCACCACCAAACGGGCTCCAGCGCGGTGTGAAGAGAGAGGAAGAAGAGAAGACAGAATTGGAAACAGCCGCGCCAGTCTACCAACCACCGTGTGTGTGTATGTAAATATGTGAGAACACATGTGTGAATCCTCTTGTGGGAACTGCAAAAAGAAGAGAAATAAAGAGTGTGAAGCAGCTAGGCCACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCG 60 consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 TTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCC 120 consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 AGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACC 180 consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 CGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCA 240 consensus_5923#1 -----------------------------------------AGCAGAATCGCCACGAGGT 19 consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 CGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGT 300 consensus_5923#1 ANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACG 79 consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 GATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGAC 360 consensus_5923#1 ATTGCAATA-ATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCG 138 consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 GAGCCGGTACGAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCA 420 consensus_5923#1 CTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGT 198 consensus_5923#2 ------------------------------------------------CCGTACAAGTTT 12 consensus_5923#0 -TGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGG 479 * * consensus_5923#1 TGGTGGCGGC-GGCTGCGACGGTGACCCGCGCCGAGGAGCAAC-CGAACCCCGTCACTGA 256 consensus_5923#2 CAGATGTGT---GCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGT 69 consensus_5923#0 CGGGTGTTGCAGAATATGACCGCCTGC-GTGATCGACAGCGTGTCGTACAG-ATCGCACA 537 * * * ** * * * * * * * * * consensus_5923#1 AGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAG-GAAGTACAGGC 315 consensus_5923#2 GTGCGCAG-GCGTTCAAGGTTCAATTGATCCTCAAG----CACAAAGG-TTCATACAACA 123 consensus_5923#0 GCGTGCCG-ATCTTCCAGTTCTCGTACTTCACGTCGA---CGTAGAACTGCCGGATACCT 593 * * ** * * * * * * * consensus_5923#1 TAACAATCTAGGTG-GCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCG 374 consensus_5923#2 CCGCGGTTGAGGCGCGCCAAATTTGATGA-----CATCTCCCCT---CAGGCAAAAACCA 175 consensus_5923#0 TCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGG 653 ** ** * * * * * * consensus_5923#1 ACCACATCGAGCGCGTGCGTCTGGG----ATCTGGCTGGATCACGANAGTGGNAAGCATA 430 consensus_5923#2 AGCAGGCTGAACATGCGCACCACCA----AACGGGCTCCAGCGCGGT-GTGAAGAGAGAG 230 consensus_5923#0 GACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCC 713 ** ** * * * * * * * * * consensus_5923#1 GCCANACCTTCGAG---ATCCTAGTNTCGGCA--CNGTCCAGGTANTGGCGGAGCACCAA 485 consensus_5923#2 GAAGAA-----GAG---AAGACAGAATTGGAA--ACAGCC-----GCGCCAGTCTACCAA 275 consensus_5923#0 GGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGC 773 * ** ** * * consensus_5923#1 TACACCGCTACGAGATNCANAGC-------CCCNAANNNGATAAC-CGAACCCAACNNCA 537 consensus_5923#2 ----CCACCGTGTG-TGTGTATG-------TAAATATGTGAGAACACATGTGTGAATCCT 323 consensus_5923#0 AAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACA 833 * * * * * ** * * * consensus_5923#1 -------CNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACC 590 consensus_5923#2 -------CTTGTGGGAACTGCAAAAAGAAGAGAAATAAA-GAGTGTGAAGCAGCTAGGCC 375 consensus_5923#0 TCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAA- 892 * ** * * * consensus_5923#1 ACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN--------------------- 629 consensus_5923#2 ACCGC------------------------------------------------------- 380 consensus_5923#0 ACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTT 952 *** consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 ATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGGTTCATGCCGGCGGGTCCATC 1012 consensus_5923#1 ------------------------------------------------------------ consensus_5923#2 ------------------------------------------------------------ consensus_5923#0 GTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGAT 1072 consensus_5923#1 -------------- consensus_5923#2 -------------- consensus_5923#0 ACACGTGCTGAATT 1086 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||