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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence
[GCCCGAGGTTAAAAGCAAGTTACGAAAACTTGAGAATTTTAGCATACTTACCACAAAACTAAGCCGAGTTTGATCAGCAAATCGTCCAGTGAGTCTATACCCACAGCCATGGGAAACACGGTGTCTGCCGCTGAAAAGGTTGCTACGAACATAGTGCCCAGCACATTGACGAAAGTGCTGAANGATGCAGACTACCTGAAGTGTGACATCACACGGTTGGCGATAAAATGCAGCATGTCCGGGTAAATTCTTCTGGCCCGAAATGTCCGGATGCCCCAAAAACAGCAAACCCAAAAGAACAACCCAGGTTGCTCGTATCCGAGGTTGCCCAATATAAAGGCAACCGGAATAGGGAGGCTGGAATGTTGAAACCCGGCGTGCACACATTGATTTGCCCACCGGGGCNAACATTNCAACAAATCCCCCGGACCCCGGGGGCCAAACCCGGTTCCCCAACTGGCCTTCACCCGGAGCGGCCCAGGTGGTCGCGCTCGGAATNTCCCGGACACAGGCGAACCACCCCGAACGGGCACAAGCCAAGAGAAGGCTATATNAGGGAGTTNGTTTAACCCCCCAAAGAGATTCCANGACCAGCGNATTGGTTCCTTGGCGACAAATTGNGCGGCAATTGGCCTTGACAGCCAANNAGGGCGACCNTTGNGCGCAGCCCTAGGTGCAACNAAAAGCGTGACACCGGACTAACTNTACNCCTTCCCAAAGCAAACAACGAAACAAATTAGTNCACGACANACTTCTCATTCAACACGNCATTTAACCAACNAAAACGGNGCCCCAAAACCACAAANTTGGAAAGGCGACTGCCCTTTTGCGCACGGGAAGAGGGTAAACACTAAAAAAGCGTAGGCGAAAAGCCCCGCCATCGGAANGGACCCCCCCGGCGGANACACTTGGTTGAGGCGAAAATTCCCCAAACCGGACACTTNGAAACGAAACCATACACGGCGGCAGCACACAAATNGGGCACAACACCCCTGGACTACTAACCAAAGCGACCCCGGCGGAGCGCCTAAAAGCAATTTANCNAGACAACCACTGGNATCGNCGAGNTACACNGCACACGCTGCCNCCGCACCGANACCGNACCAACANAACCTGNGACATCCATCAGCACN]
[+] EMBL AL693418 [GCCCGAGGTTAAAAGCAAGTTACGAAAACTTGAGAATTTTAGCATACTTACCACAAAACTAAGCCGAGTTTGATCAGCAAATCGTCCAGTGAGTCTATACCCACAGCCATGGGAAACACGGTGTCTGCCGCTGAAAAGGTTGCTACGAACATAGTGCCCAGCACATTGACGAAAGTGCTGAANGATGCAGACTACCTGAAGTGTGACATCACACGGTTGGCGATAAAATGCAGCATGTCCGGGTAAATTCTTCTGGCCCGAAATGTCCGGATGCCCCAAAAACAGCAAACCCAAAAGAACAACCCAGGTTGCTCGTATCCGAGGTTGCCCAATATAAAGGCAACCGGAATAGGGAGGCTGGAATGTTGAAACCCGGCGTGCACACATTGATTTGCCCACCGGGGCNAACATTNCAACAAATCCCCCGGACCCCGGGGGCCAAACCCGGTTCCCCAACTGGCCTTCACCCGGAGCGGCCCAGGTGGTCGCGCTCGGAATNTCCCGGACACAGGCGAACCACCCCGAACGGGCACAAGCCAAGAGAAGGCTATATNAGGGAGTTNGTTTAACCCCCCAAAGAGATTCCANGACCAGCGNATTGGTTCCTTGGCGACAAATTGNGCGGCAATTGGCCTTGACAGCCAANNAGGGCGACCNTTGNGCGCAGCCCTAGGTGCAACNAAAAGCGTGACACCGGACTAACTNTACNCCTTCCCAAAGCAAACAACGAAACAAATTAGTNCACGACANACTTCTCATTCAACACGNCATTTAACCAACNAAAACGGNGCCCCAAAACCACAAANTTGGAAAGGCGACTGCCCTTTTGCGCACGGGAAGAGGGTAAACACTAAAAAAGCGTAGGCGAAAAGCCCCGCCATCGGAANGGACCCCCCCGGCGGANACACTTGGTTGAGGCGAAAATTCCCCAAACCGGACACTTNGAAACGAAACCATACACGGCGGCAGCACACAAATNGGGCACAACACCCCTGGACTACTAACCAAAGCGACCCCGGCGGAGCGCCTAAAAGCAATTTANCNAGACAACCACTGGNATCGNCGAGNTACACNGCACACGCTGCCNCCGCACCGANACCGNACCAACANAACCTGNGACATCCATCAGCACN]
consensusID : consensus_5926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 682 fasta sequence
[CCGGTCCCGAGTACCATCGCTGACCGTGCACCCATCGATACTGCGCCAACATAGTTTGAGTCCGAAACCGCTGCTAGTACGGAATACGGCGCCATGGGGTCCCTGTTCCGCAGTGAGGAGATGTCCCTCTGCCAGCTCTTCCTGCAGAGCGAGGCCGCGTACGCTTGTGTGTCGGAGCTGGGAGAGCTCGGATTGGTTCAGTTCCGTGATCTCAACCCCGACGTCAATGCGTTCCAGCGCAAGTTCGTCAACGAGGTGCGGCGGTGCGATGAGATGGAGCGCAAACTGCGCTACCTCGAGAAGGAAATAAAAAAAGACGGCATCCCGATGCTGGACACGGGCGAGAGCCCGGAAGCACCGCAGCCACGCGAGATGATCGACTTGGAGGCAACGTTCGAGAAGCTGGAGAACGAGCTGCGCGAGGTGAATCAAAACGCCGAGGCACTGAAGCGCAACTATCTCGAGCTGACGGAGCTGAAGCACATCCTGCGTAAGACTCAGGTCTTCTTTGACGAGCAAGAGGGTGGCATGCATACCACCGAATCGATGACCCGGGCGTTGATCACGGACGAATCACGCACTGGCAAGGCAATGGGTCCTGTTCAGCTAGGCTTTGTTGCTGGTGTGATCCTGCGTGAACGTTTGCCGGCGTTCGAGCGTATGCTGTGGCGTGCCTGCCGTG]
[+] EMBL BM640187 [CCGGTCCACAGTACCATCGCTGACCGTGCACCCATCGATACTGCGCCAACATAGTTTGAGTCCGAAACCGCTGCTAGTACGGAATACGGCGCCATGGGGTCCCTGTTCCGCAGTGAGGAGATGTCCCTCTGCCAGCTCTTCCTGCAGAGCGAGGCCGCGTACGCTTGTGTGTCGGAGCTGGGAGAGCTCGGATTGGTTCAGTTCCGTGATCTCAACCCCGACGTCAATGCGTTCCAGCGCAAGTTCGTCAACGAGGTGCGGCGGTGCGATGAGATGGAGCGCAAACTGCGCTACCTCGAGAAGGAAATAAAAAAAGACGGCATCCCGATGCTGGACACGGGCGAGAGCCCGGAAGCACCGCAGCCACGCGAGATGATCGACTTGGAGGCAACGTTCGAGAAGCTGGAGAACGAGCTGCGCGAGGTGAATCAAAACGCCGAGGCACTGAAGCGCAACTATCTCGAGCTGACGGAGCTGAAGCACATCCTGCGTAAGACTCAGGTCTTCTTTGACGAGCAAGAGGGTGGCATGCATACCACCGAATCGATGACCCGGGCGTTGATCACGGACGAATCACGCACTGGCAAGGCAATGGGTCCTGTTCAGCTAGGCTTTGTTGCTGGTGTGATCCTGCGTGAACGTTTGCCGGCGTTCGAGCGTATGCTGTGGCGTGCCTGCCGTG]
[+] EMBL BM620112 [CCGCCCACGCGTCCGATCGCTGACCGTGCACCCATCGATACTGCGCCAACATAGTTTGAGTCCGAAACCGCTGCTAGTACGGAATACGGCGCCATGGGGTCCCTGTTCCGCAGTGAGGAGATGTCCCTCTGCCAGCTCTTCCTGCAGAGCGAGGCCGCGTACGCTTGTGTGTCGGAGCTGGGAGAGCTCGGATTGGTTCAGTTCCGTGATCTCAACCCCGACGTCAATGCGTTCCAGCGCAAGTTCGTCAACGAGGTGCGGCGGTGCGATGAGATGGAGCGCAAACTGCGCTACCTCGAGAAGGAAAT AAAAAAGACGGCATCCCGATGCTGGACACGGGCGAGAGCCCGGAAGCACCGCAGCCACGCGAGATGATCGACTTGGAGGCAACGTTCGAGAAGCTGGAGAACGAGCTGCGCGAGGTGAATCAAAACGCCGAGGCACTGAAGCGCAACTATCTCGAGCTGACGGAGCTGAAGCACATCCTGCGTAAGACTCAGGTCTTCTTTGACGAGCAAGAGGGTGGCATGCATACCACCGAATCGATGACCCGGGCGTTGATCACGGACGAATCACGCACTGGCAAGGCAATGGGTCCTGTTCAGCTAGGCTTTGTTGCTGGTGTGATCCTGCGTGAACGTTTGCCGGCGTTCGAGCGTATGCTG ]
[+] EMBL BM612686 [ CCGAGTACCATCGCTGACCGTGCACCCATCGATACTGCGCCAACATAGTTTGAGTCCGAAACCGCTGCTAGTACGGAATACGGCGCCATGGGGTCCCTGTTCCGCAGTGAGGAGATGTCCCTCTGCCAGCTCTTCCTGCAGAGCGAGGCCGCGTACGCTTGTGTGTCGGAGCTGGGAGAGCTCGGATTGGTTCAGTTCCGTGATCTCAACCCCGACGTCAATGCGTTCCAGCGCAAGTTCGTCAACGAGGTGCGGCGGTGCGATGAGATGGAGCGCAAACTGCGCTACCTCGAGAAGGAAATAAAAAAAGACGGCATCCCGATGCTGGACACGGGCGAGAGCCCGGAAGCACCGCAGCCACGCGAGATGATCGACTTGGAGGCAACGTTCGAGAAGCTGGAGAACGAGCTGCGCGAGGTGAATCAAAACGCCGAGGCACTGAAGCGCAACTATCTCGAGCTGACGGAGCTGAAGCACATCCTGCGTAAGACTCAGGTCTTCTTTGACGAGCAAGAGGGTGGCATGCATACCACCGAATCGATGACCCGGGCGTTGATCACGGACGAATCACGCACTGGCAAGGCAATGGGTCCTGTTCAGCTAGGCTTTGTTGCTGGTGTGATCCTGCGTGAACGTTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5926#0 GCCCGAGGTTAAAAGCAAGTTACGAAAACTTGAGAATTTTAGCATACTTACCACAAAACT 60
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 AAGCCGAGTTTGATCAGCAAATCGTCCAGTGAGTCTATACCCACAGCCATGGGAAACACG 120
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 GTGTCTGCCGCTGAAAAGGTTGCTACGAACATAGTGCCCAGCACATTGACGAAAGTGCTG 180
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 AANGATGCAGACTACCTGAAGTGTGACATCACACGGTTGGCGATAAAATGCAGCATGTCC 240
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 GGGTAAATTCTTCTGGCCCGAAATGTCCGGATGCCCCAAAAACAGCAAACCCAAAAGAAC 300
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 AACCCAGGTTGCTCGTATCCGAGGTTGCCCAATATAAAGGCAACCGGAATAGGGAGGCTG 360
consensus_5926#1 ------------------------------------------------------------
consensus_5926#0 GAATGTTGAAACCCGGCGTGCACACATTGATTTGCCCACCGGGGCNAACATTN-CAACAA 419
consensus_5926#1 -------------------------------CCGGTCCCGAGTACCATCGCTGACCGTGC 29
* * * * * * * * *
consensus_5926#0 ATCCCCCGG-ACCCCGGGGGCCAAACCCGGTTCCCCAACTGGCCTTCACCCGGAGCGGCC 478
consensus_5926#1 ACCCATCGATACTGCGCCAACATAGTTTGAGTCCGAAACCGCTGCTAGTACGGAATA--C 87
* ** ** ** ** * * * *** *** * * **** *
consensus_5926#0 CAGGTGGTCGCGCTCGGAATNTCCCGGACACAGGCGAACCACCCCGAACGGGCACAAGCC 538
consensus_5926#1 GGCGCCATGGGGTCCC---TGTTCCGCAGTGAGGAGATGTCCCTCTGCCAGCTCTTCCTG 144
* * * * * * * *** * *** ** ** * * *
consensus_5926#0 AAGAG-AAGGCTATATNAGGGAGTTNGTTTAACCCCCCAAAGAGATTCCANGACCAGCGN 597
consensus_5926#1 CAGAGCGAGGCCGCGTACGCTTGTGTGTCGGAGCT----GGGAGAGCTCGG----ATTGG 196
**** **** * * ** ** * * **** * * *
consensus_5926#0 ATTGGTTCCTTGGCGACAAATTGNGCGGCAATTGGCCTTGACAGCCAANNAGGGCGACCN 657
consensus_5926#1 TTCAGTTCCGTGATCTCAACCCCGACGTCAATGCGTTCCAGC-----GCAAGTTCGTCAA 251
* ***** ** *** ** **** * * ** ** *
consensus_5926#0 TTGNGCGCAGCCCTAGGTGCAACNAAAAGCGTGACACCGGACTAACTNTACNCCTTCCCA 717
consensus_5926#1 CGAGGTGCGGC----GGTGCGATGA-------GATGGAGCGCAAACTGCGCTACCTCGAG 300
* ** ** ***** * * ** * * **** * * **
consensus_5926#0 AAGCAAACAACGAAACAAATTAGTNCACGACANACTTCTCATTCAACACGNCATTTAACC 777
consensus_5926#1 AAGGAAATAAAAAAAGACGGCATCCCG----ATGCTGGACACGGGCGAGAGCCCGGAAGC 356
*** *** ** *** * * * * ** ** * * ** *
consensus_5926#0 AACNAAAACGGNGCCCCAAAACCACAAANTTGGAAAGGCGACTGCCCTTTTGCGCACGGG 837
consensus_5926#1 ACCG----CAGCCACGCGAGATGATCGACTTGGA--GGCAAC-----------GTTCGAG 399
* * * * * * * * * * ***** *** ** * ** *
consensus_5926#0 AAGAGGGTAAACA--CTAAAAAAGCGTAGGCGAAAAGCCCCGCCATCGGAANGGACCCCC 895
consensus_5926#1 AAGCTGGAGAACGAGCTGCGCGAGGTGAATCAAAACGCCGAGGCACTGAAGCGCAACTAT 459
*** ** *** ** ** * * *** *** * ** * * * * *
consensus_5926#0 CCGGCGGANACACTTGGTTGAGGCGAAAATTCCCCAAA--CCGGACACTTNGAAACGAAA 953
consensus_5926#1 CT--CGAGCTGACGGAGCTGAAGCACATCCTGCGTAAGACTCAGGTCTTCTTTGACGAGC 517
* ** ** * *** ** * * * ** * * * ****
consensus_5926#0 CCATACACGGCG-GCAGCACACAAATNGGGCACAACACCCCTGGACTACTAACCAAAGCG 1012
consensus_5926#1 AAGAGGGTGGCATGCATACCACCGAATCGATGACCCGGGCGTTGATCACGGACGAATCAC 577
*** *** *** * * * * * ** ** ** **
consensus_5926#0 ACCCCGGCGGAGCGCCTAAAAGCAATTTANCNAGACAACCACTGGNATCGNCGAGNTACA 1072
consensus_5926#1 GCACTGGCAAGGC-----AATGGGTCCTGTTCAGCTAGGCTTTGTTGCTGGTGTGATCCT 632
* * *** ** ** * * ** * * ** * * * * *
consensus_5926#0 CNGCACACGCT-GCCNCCGCACCGANACCGNACCAACANA-ACCTGNGACATCCATCAGC 1130
consensus_5926#1 GCGTGAACGTTTGCCGGCGT-TCGAGCGTATGCTGTGGCGTGCCTGCCGTG--------- 682
* *** * *** ** *** * ****
consensus_5926#0 ACN 1133
consensus_5926#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||