cluster # 5940

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Anopheles gambiae
cluster # 5940 cluster # 5940 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5940#0 length = 1199 sequences # 4

consensus_5940#1 length = 685 sequences # 1

consensusID : consensus_5940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1199
fasta sequence

                              [CCGCCCACGCGTCCGCCCGCTCAGCTCATTGAACGAATTTTCCGTGTCGACTAAAGTGCTTCGTAATCAAACGTACGCTACCGAATCGGGCAACTACCATGAGTTTAAGATTTTGGGATCCCGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTTCTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACACAATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGTTAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCAAGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAATGTGTTACTTGTTATGCTTTGTGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACACAGTAGATGTAATCATATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCCCTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACTATATTGCTATATTGCA----TTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGCCCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCGTTGCCTTGAGCTTTTTGAGAAAGGTTGCGTGCAGTTGTGTCATAATTGTTAATCATTAGTCATTGTACCAAAATACATGTAGAACAGAAAAAGGCGTTGAAATAAATAAAATTTTCATA]

[+] EMBL BM629536             [CCGCCCACGCGTCCGCCCGCTCAGCTCATTGAACGAATTTTCCGTGTCGACTAAAGTGCTTCGTAATCAAACGTACGCTACCGAATCGGGCAACTACCATGAGTTTAAGATTTTGGGATCCCGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTTCTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACACAATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGTTAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX621937             [                                                                                                                                                                                                                                                                                                                                                CGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCAAGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAACGTGTTACTTGTTATGCTTTGTGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACACAGTAGATGTAATCATATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCCCTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACTATATTGCTATATTGCA    TTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGCCCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCGTTGCCTTGAGCTTTTTGANGAAGGTTGCGTGCAGTTGTGTCATAATTGgt                                                                     ]
[+] EMBL BM645577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCATGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAATGTGTTACTTGTTATGCTTTGTGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACACAGTAGATGTAATCATATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCCCTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACTATATTGCTATATTGCATTCTTTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGCCCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCGTTGCCTTGAGCTTTTTGAGAAAGGTTGCGTGCAGTTGTGTCATAATTGTTAATCATTAGTCATTGTACCAAAATACATGTAGAACAGAAAAAGGCGTTGAAAT                ]
[-] EMBL BM625383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAATGTGTTACTTGTTATGCTTTGTGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACCCAGTAGATGTAATCATATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCCCTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACTATATTGCTATATTGCATTCTTTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGCCCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCGTTGCCTTGAGCTTTTTGAGAAAGGTTGCGTGCAGTTGTGTCATAATTGTTAATCATTAGTCATTGTACCAAAATACATGTAGAACAGAAAAAGGCGTTGAAATAAATAAAATTTTCATA]




>consensus_5940#0
CCGCCCACGCGTCCGCCCGCTCAGCTCATTGAACGAATTTTCCGTGTCGACTAAAGTGCT
TCGTAATCAAACGTACGCTACCGAATCGGGCAACTACCATGAGTTTAAGATTTTGGGATC
CCGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTT
CTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACAC
AATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGT
TAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTA
CGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGC
AATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCT
GGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGC
ATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTT
GCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGA
GCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCAAGCGACGATTCAGTTGCAATACT
TACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAATGTGTTACTTGTTATGCTTTG
TGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACACAGTAGATGTAATCA
TATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCC
CTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACT
ATATTGCTATATTGCATTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGC
CCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCG
TTGCCTTGAGCTTTTTGAGAAAGGTTGCGTGCAGTTGTGTCATAATTGTTAATCATTAGT
CATTGTACCAAAATACATGTAGAACAGAAAAAGGCGTTGAAATAAATAAAATTTTCATA

consensusID : consensus_5940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTTCTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACACAATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGTTAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCAAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCATGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAACGTGTTACTTGTTATGCTTTG]

[+] EMBL BM656504             [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTTCTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACACAATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGTTAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTTGCAAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCATGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAACGTGTTACTTGTTATGCTTTG]




>consensus_5940#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCG
TCGACCAGAAAACGGGCGTCATTTTCTACGCGCTGCCGAACCTAAATGCCATCACGTGCT
GGAAAACGTCCAATCGCGCATACACAATCAAATCGCTCGGTCGCGTGTATATGAGCACCG
TCGACATGGTGTTCCCCAACGATGTTAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTT
CCGATCGACTACACCAGTACATGTACGAATCACTCAATCGAAACGATGTCAACTTCCGTG
TTCTAACCGCCACCGTCAAGGACGCAATACAAAACACCGCTTGTGATACAAACATTAAGC
CGCTGCCAGATATTATTACCAATCTGGGTGATATTCTGCGACCCTCCACAAGCACCATCG
CACCCAAGGCTGGTTCGAGCAGTGCATGGCCATCTCCGTCGCATACTAATGCGATAGTGG
TGCTTTCGATGCTTATCACTATGTTGCAAGTGTCCTACTGCATCAGGATATAGGGACGGA
CGGGCGATTTATCTTTGTTTGCTGAGCAACTAGAAAATCAGGGATCTGTGTGAGCTATTG
CATGCGACGATTCAGTTGCAATACTTACATTTTCGTTTCTGTTAGAAATATTGATATAGA
GCAACGTGTTACTTGTTATGCTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5940#0      CCGCCCACGCGTCCGCCCGCTCAGCTCATTGAACGAATTTTCCGTGTCGACTAAAGTGCT 60
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TCGTAATCAAACGTACGCTACCGAATCGGGCAACTACCATGAGTTTAAGATTTTGGGATC 120
consensus_5940#1      --------------------------------CCGCCCACGCGTCCG---CCCACGCGTC 25
                                                       *  *** * **           *  **

consensus_5940#0      CCGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTT 180
consensus_5940#1      CGGCGGACCGAACGGTCAGGCCGGGGTGGCGTTCGTCGACCAGAAAACGGGCGTCATTTT 85
                      * **********************************************************

consensus_5940#0      CTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACAC 240
consensus_5940#1      CTACGCGCTGCCGAACCTAAATGCCATCACGTGCTGGAAAACGTCCAATCGCGCATACAC 145
                      ************************************************************

consensus_5940#0      AATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGT 300
consensus_5940#1      AATCAAATCGCTCGGTCGCGTGTATATGAGCACCGTCGACATGGTGTTCCCCAACGATGT 205
                      ************************************************************

consensus_5940#0      TAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTA 360
consensus_5940#1      TAAGGTAGACGACGAAAGTAACCTCTGGGTGCTTTCCGATCGACTACACCAGTACATGTA 265
                      ************************************************************

consensus_5940#0      CGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGC 420
consensus_5940#1      CGAATCACTCAATCGAAACGATGTCAACTTCCGTGTTCTAACCGCCACCGTCAAGGACGC 325
                      ************************************************************

consensus_5940#0      AATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCT 480
consensus_5940#1      AATACAAAACACCGCTTGTGATACAAACATTAAGCCGCTGCCAGATATTATTACCAATCT 385
                      ************************************************************

consensus_5940#0      GGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGC 540
consensus_5940#1      GGGTGATATTCTGCGACCCTCCACAAGCACCATCGCACCCAAGGCTGGTTCGAGCAGTGC 445
                      ************************************************************

consensus_5940#0      ATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTT 600
consensus_5940#1      ATGGCCATCTCCGTCGCATACTAATGCGATAGTGGTGCTTTCGATGCTTATCACTATGTT 505
                      ************************************************************

consensus_5940#0      GCGAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGA 660
consensus_5940#1      GCAAGTGTCCTACTGCATCAGGATATAGGGACGGACGGGCGATTTATCTTTGTTTGCTGA 565
                      ** *********************************************************

consensus_5940#0      GCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCAAGCGACGATTCAGTTGCAATACT 720
consensus_5940#1      GCAACTAGAAAATCAGGGATCTGTGTGAGCTATTGCATGCGACGATTCAGTTGCAATACT 625
                      ************************************* **********************

consensus_5940#0      TACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAATGTGTTACTTGTTATGCTTTG 780
consensus_5940#1      TACATTTTCGTTTCTGTTAGAAATATTGATATAGAGCAACGTGTTACTTGTTATGCTTTG 685
                      *************************************** ********************

consensus_5940#0      TGTTTGCTATCAGTATTCAATCAACTCAATGGAACTGCTTTCACACAGTAGATGTAATCA 840
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TATCTATCGGCTATGGAGGAAAGGCATTCTATCTGACCACATTTACTTGAAGCGATTCCC 900
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      CTTGTATTTCGAATTTTTGAAATGGAGGATTCGTTTTCATCGAACCCTTGCACATAAACT 960
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      ATATTGCTATATTGCATTCGGAAGATATATCATACTGTGACTCTCTGCTACCTTCTATGC 1020
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      CCGAGCTTACTCGTTGTCCAGCACAGACACATTCACTTCGCTCCACGGTACTCATAACCG 1080
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      TTGCCTTGAGCTTTTTGAGAAAGGTTGCGTGCAGTTGTGTCATAATTGTTAATCATTAGT 1140
consensus_5940#1      ------------------------------------------------------------
                                                                                  

consensus_5940#0      CATTGTACCAAAATACATGTAGAACAGAAAAAGGCGTTGAAATAAATAAAATTTTCATA 1199
consensus_5940#1      -----------------------------------------------------------