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Anopheles gambiae
cluster # 5955 cluster # 5955       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5955#0 length = 817 sequences # 3  
consensus_5955#1 length = 680 sequences # 2  

consensusID : consensus_5955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 817
fasta sequence
                              [CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTAGAGAAAAACAAAAGGTAAACAAACACAT-CATAT-C-GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC-TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG-TGCTGCTGGCCTACAGTGTACT-ATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA]

[+] EMBL BM595180             [CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAATTGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTG                                                                                                                                                                                                    ]
[+] EMBL BM606707             [                                                      CCGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG TGCTGCTGGCCTACAGTGTACT ATGCGT                                                                                                                                                                ]
[+] EMBL BX466309             [                                                  gatcggccgAGGGATTAACAAAAGGT AACAAACACATCCATATNCGGGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGATGCTGCTGGCCTACAGTGTACTCATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA]


>consensus_5955#0 CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTA GAGAAAAACAAAAGGTAAACAAACACATCATATCGGCGAAAAATTTTGCACGCAGAAACC CACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGT ATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTT GCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTC CTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCT GCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACAT CGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACT GCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCA GGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCT ACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGT CCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTG GGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCC GATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA



consensusID : consensus_5955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence
                              [CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC]

[+] EMBL BM608673             [CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCC                ]
[+] EMBL BM576449             [                                      ccgCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAGGTCGATGGTTGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGCC]


>consensus_5955#1 CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGC TGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAG TCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCG TAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATA CGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCA GGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCA GTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGT TCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAAC CGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGG ATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGA TGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATC TGCCACCGTGCAGCCGGGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5955#0      CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTA 60
consensus_5955#1      ------------------------------------------------------------
                                                                                  

consensus_5955#0      GAGAAAAACAAAAGGTAAACAAACACATCATATCGGCGAAAAATTTTGCACGCAGAAACC 120
consensus_5955#1      ------------------CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACC 42
                                         *   ***       ***************************

consensus_5955#0      CACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGT 180
consensus_5955#1      TACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGT 102
                       *** *********************************************** *******

consensus_5955#0      ATGATATTCCCACGGAAGTCACACACCGTCAGAGAG----TGCACTACCCGGGCCCTGCA 236
consensus_5955#1      ATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCA 162
                      ********** *************************    ********************

consensus_5955#0      TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 296
consensus_5955#1      TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 222
                      ************************************************************

consensus_5955#0      TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 356
consensus_5955#1      TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 282
                      ************************************************************

consensus_5955#0      CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 416
consensus_5955#1      CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 342
                      ************************************************************

consensus_5955#0      ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 476
consensus_5955#1      ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 402
                      ************************************************************

consensus_5955#0      CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 536
consensus_5955#1      CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 462
                      ************************************************************

consensus_5955#0      AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 596
consensus_5955#1      AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 522
                      ************************************************************

consensus_5955#0      ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 656
consensus_5955#1      ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 582
                      ************************************************************

consensus_5955#0      TCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTG 716
consensus_5955#1      TCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGG-TGGCTCGCGCTT-AAGTCGATG 640
                      ********************** ************** ************   **** **

consensus_5955#0      GTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAA 776
consensus_5955#1      GTTGG-TGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC------------------- 680
                      ***** ********* *********************** *                   

consensus_5955#0      TCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA 817
consensus_5955#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)