These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 817 fasta sequence [CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTAGAGAAAAACAAAAGGTAAACAAACACAT-CATAT-C-GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC-TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG-TGCTGCTGGCCTACAGTGTACT-ATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA] [+] EMBL BM595180 [CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAATTGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTG ] [+] EMBL BM606707 [ CCGGTAGAGAAAAACAAAAGGTAAACAAACACAT CATAT C GGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAG TGCTGCTGGCCTACAGTGTACT ATGCGT ] [+] EMBL BX466309 [ gatcggccgAGGGATTAACAAAAGGT AACAAACACATCCATATNCGGGCGAAAAATTTTGCACGCAGAAACCCACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGTATGATATTCCCACGGAAGTCACACACCGTCAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGC TGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGATGCTGCTGGCCTACAGTGTACTCATGCGTCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTGGTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAATCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA] consensusID : consensus_5955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC] [+] EMBL BM608673 [CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAAGTCGATGGTTGGTGCGCCGAAACCATCTGCC ] [+] EMBL BM576449 [ ccgCTACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGTATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCATTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCCTTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCCCCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGAACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCATCACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGCAGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACTACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCGTCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGGTGGCTCGCGCTTAGGTCGATGGTTGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5955#0 CCGCAAATTTTCCCTCACTGCGCGTGTGTGTGTGTGTGTGCGGGTGCCTGTAAACCGGTA 60 consensus_5955#1 ------------------------------------------------------------ consensus_5955#0 GAGAAAAACAAAAGGTAAACAAACACATCATATCGGCGAAAAATTTTGCACGCAGAAACC 120 consensus_5955#1 ------------------CCGCCCACGCGTCCGCGGCGAAAAATTTTGCACGCAGAAACC 42 * *** *************************** consensus_5955#0 CACTGGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTGTGGTTGT 180 consensus_5955#1 TACTAGCAGTGCCGTTGCTGTGCGAACCAGGACGGCGGCGATTGTGCTCACTATGGTTGT 102 *** *********************************************** ******* consensus_5955#0 ATGATATTCCCACGGAAGTCACACACCGTCAGAGAG----TGCACTACCCGGGCCCTGCA 236 consensus_5955#1 ATGATATTCCTACGGAAGTCACACACCGTCAGAGAGAGAGTGCACTACCCGGGCCCTGCA 162 ********** ************************* ******************** consensus_5955#0 TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 296 consensus_5955#1 TTTTGCGAAACTGCTGCGTAATCGACTTTCGTTTGTACAATCGAGGTAAAGCGAAGCTCC 222 ************************************************************ consensus_5955#0 TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 356 consensus_5955#1 TTTCCTCTGTCTCGAATACGGTACCGTTCCGGGCGCCAACGCTTCACCGACCATCCACCC 282 ************************************************************ consensus_5955#0 CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 416 consensus_5955#1 CCCTGCCGGTACACATCAGGTCCGGGTGACGTGATGAGGAAATGATTCATGCTTCCTCGA 342 ************************************************************ consensus_5955#0 ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 476 consensus_5955#1 ACATCGATCCGCACGGCAGTGACACTATCATCCGCTCGGTTCCATCGCCCGTGCCATCAT 402 ************************************************************ consensus_5955#0 CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 536 consensus_5955#1 CACTGCTCGCGTGGTGGTTCCAGTGCGGAAAGACGGAAGCACAGCAGGAACAGCAGCAGC 462 ************************************************************ consensus_5955#0 AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 596 consensus_5955#1 AGCAGGATCCGCTCGAACCGACCGGCTGCCTGGAGGTGATTTACGGTATCGCGCTGCACT 522 ************************************************************ consensus_5955#0 ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 656 consensus_5955#1 ACCTACACGAAACGCTGGATCACATTGTGCTAGTGCTGCTGGCCTACAGTGTACTATGCG 582 ************************************************************ consensus_5955#0 TCGTCCTGTACCGGGTGATGTTTCACCGTGCGACCGGGTGGCTCGCGCTTCGGGTCGGTG 716 consensus_5955#1 TCGTCCTGTACCGGGTGATGTTCCACCGTGCGACCGG-TGGCTCGCGCTT-AAGTCGATG 640 ********************** ************** ************ **** ** consensus_5955#0 GTTGGGTGCGCCGAAGCCATCTGCCACCGTGCAGCCGGGGCCTGCTCCGTGACCGGCCAA 776 consensus_5955#1 GTTGG-TGCGCCGAAACCATCTGCCACCGTGCAGCCGGGCC------------------- 680 ***** ********* *********************** * consensus_5955#0 TCCCGATACGAAGGGTGAATGTTCTTNGGGTCCGACCAATA 817 consensus_5955#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||