These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTACAATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACGTGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTGTGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTACAATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAGCTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAAAGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAACCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAATTGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG] [+] EMBL BM649177 [GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTACAATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACGTGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTGTGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTACAATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAGCTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAAAGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAACCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAATTGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG] consensusID : consensus_5957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCATACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAAGACCCAGAAGAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCGAAGGGAAAGGTCCGCGACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGACAAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGGCTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCGTGAGCTCTGCCAGAAGGGGCTCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAGACGATCCAGTGGCGTAAGCTGGAGATTCCGTT] [+] EMBL BM654127 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCATACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAAGACCCAGAAGAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCGAAGGGAAAGGTCCGCGACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGACAAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGGCTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCGTGAGCTCTGCCAGAAGGGGCTCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAGACGATCCAGTGGCGTAAGCTGGAGATTCCGTT] consensusID : consensus_5957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [GACAGCAGGAGCCTTCCCGTGTGCCGGACCGCGCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACAGACGCAGCCGGACCGCAGACAGGACCGCACCACACAACAACAGCCCCAAAATTCACAGATCCAAGATGACCGCCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTACAAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAATCTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGACACGCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC] [+] EMBL BX623552 [GACAGCAGGAGCCTTCCCGTGTGCCGGACCGCGCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACAGACGCAGCCGGACCGCAGACAGGACCGCACCACACAACAACAGCCCCAAAATTCACAGATCCAAGATGACCGCCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTACAAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAATCTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGACACGCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC] consensusID : consensus_5957#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [GGCTGCGGCCCGACCAGCGTCGCCCGAGCACCGTCCACGAACAGGGCGGTCCCTTCGGCCAGCCCGAGCACCGGTGCCTCGTTCAGCTCGTGAGAGATGGTTGAGGCGCTCCGGGCGCGTGTGGCCCTTGTGCG] [+] EMBL CNS09R9T [GGCTGCGGCCCGACCAGCGTCGCCCGAGCACCGTCCACGAACAGGGCGGTCCCTTCGGCCAGCCCGAGCACCGGTGCCTCGTTCAGCTCGTGAGAGATGGTTGAGGCGCTCCGGGCGCGTGTGGCCCTTGTGCG] consensusID : consensus_5957#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 84 fasta sequence [CACATACACACAGATACGGGACACGGAACACGGAACAGGAATAACAATCGAGGCAAAACAAAGCATCGAGCTTTTTCGAACGAG] [+] EMBL BX614365 [CACATACACACAGATACGGGACACGGAACACGGAACAGGAATAACAATCGAGGCAAAACAAAGCATCGAGCTTTTTCGAACGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5957#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCAT 60 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ------------------------------------------------------------ consensus_5957#2 ----------------------------GACAGCAGGAGCCTTCCCGTGTGCCGGACCGC 32 consensus_5957#0 -GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTAC 59 consensus_5957#1 ACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAA-GACC 119 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ----------------------GGCTGCGGCCCGACCAGCG--TCGCCCGAGCAC-CGTC 35 consensus_5957#2 GCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACA-GACG 91 consensus_5957#0 AATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACG 119 consensus_5957#1 CAGAAGAAGAAGGAGGGAGGATCCGGAGGA-AAGGCCAAGAAGAAGAAGTG----GTCGA 174 consensus_5957#4 CACATACACACAGATACGGGACACGGAACA-CGGAACAGGAATAACAATCG----AGGCA 55 consensus_5957#3 CACGAACAGGGCGGTCCCTTCGGCCAGCCC-GAGCACCGGTGCCTCGTTCA----GCTCG 90 consensus_5957#2 CAGCCGGACCGCAGACAGGACCGCACCACA-CAACAACAGCCCCAAAATTC----ACAGA 146 consensus_5957#0 TGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTG 179 * consensus_5957#1 AGGGAAAGGTCCGC-GACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGAC 233 consensus_5957#4 AAACAAAGCATCGA-GCTTTTTCGAACGAG------------------------------ 84 consensus_5957#3 TGAGAGATGGTTGA-GGCGCTCCGGGCGCGTGTGGCCCTTGTGCG--------------- 134 consensus_5957#2 TCCAAGATGACCG---CCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTAC 203 consensus_5957#0 TGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTAC 239 * * * consensus_5957#1 AAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGG 293 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ------------------------------------------------------------ consensus_5957#2 AAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAAT 263 consensus_5957#0 AATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAG 299 consensus_5957#1 CTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCG--TGAGCTCTGCCAGAAGGGGC 351 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ------------------------------------------------------------ consensus_5957#2 CTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGA--CACGCTCTACCAGGGCGGCT 321 consensus_5957#0 CTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAA 359 consensus_5957#1 TCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAG 411 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ------------------------------------------------------------ consensus_5957#2 ACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC----------------------- 358 consensus_5957#0 AGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAA 419 consensus_5957#1 ACGATCCAGTGGCGTAAGCTGGAGATTCCGTT---------------------------- 443 consensus_5957#4 ------------------------------------------------------------ consensus_5957#3 ------------------------------------------------------------ consensus_5957#2 ------------------------------------------------------------ consensus_5957#0 CCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAAT 479 consensus_5957#1 --------------------------------- consensus_5957#4 --------------------------------- consensus_5957#3 --------------------------------- consensus_5957#2 --------------------------------- consensus_5957#0 TGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG 512 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||