These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1392 fasta sequence [GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTTTACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAGAGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGAAGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGCAGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCACCAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACACCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTTACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAGGTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGACGGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCCCAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCACACCCCTTAACCTTATTCGGGCCCAACGGTTNGGAACCCCCCGGCATNTACTCAAGNGTACAAATTACTGGGCTNCGTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGACATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAAATCTGGCCACACCAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAANCNCGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAAANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAATATCCCATTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGTAGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACACACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNTAAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAACTNATAACATTAAACCNGGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAAAACAGGTGAACGTACGGTACAT] [+] EMBL AL693899 [GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTTTACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAGAGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGAAGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGCAGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCACCAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACACCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTTACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAGGTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGACGGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCCCAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCACACCCCTTAACCTTATTCGGGCCCAACGGTTNGGAACCCCCCGGCATNTACTCAAGNGTACAAATTACTGGGCTNCGTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGACATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAAATCTGGCCACACCAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAANCNCGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAAANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAATATCCCATTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGTAGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACACACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNTAAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAACTNATAACATTAAACCNGGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAAAACAGGTGAACGTACGGTACAT] consensusID : consensus_5961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1060 fasta sequence [TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCAGCGACAGTGAAGC-GGTTAGGCAAAATCTTCTTTG-TCTAAAAC-AAACAAAATGAATCACAATTCTGTAGTGTTTAAATGAT-AAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT--AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG-AGGGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAATTATCGACTTTAAAC-AAAAAACAGGATTTAATTTTGGAAACACAAAACAACTTGGCAGTAGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGGAAGGAAATACATATGAGTATGTATTAAACACTAAGCCGTGTACAAAATGAAACAGCAAAACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTATGCATAAACAATATTCTAATCCATGCTTTTGGTCCGCTATCTGCTTTATCTTCATGAACTCTTACAA] [+] EMBL BM630971 [TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCAGCGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAACAAAACAAAATGAATCACAATTCTGTAGTGTTTAAATGATAAAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG GGGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCT ] [+] EMBL AL930675 [ gatcgccgAGGTCAAATCTTCTTTG TCTAAAAC AAACAAAATGAATCACAATTCTGTAGTGTTTAAATGAT AAAGGAAAAAAAGGAGAAACAGTGACAGAAAGT AAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGGAACAGTGGGGGATTGAAGCAGGGCCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTTCTCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAA CTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCAGTTCCATTGCTATAATGGTGCCGGGGATACTACGTTGGCCAATCTGAATGAAAAC ] [+] EMBL BM613960 [ ccgGGAGAAACAGTGACAGAAAGTAAAAAATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTTGAAACAGTGGGGGATTGAAG A GGGCAGCAAGGGTAATAGGAGCAGTAGAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAAGTGACCGATTAGTATTGTTTTCCGCTGATGTTTTTATTCTCACTATTTAAGATTCCTTATTCGATGCAAGGTATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAATTATCGACTTTAAAC AAAAAACAGGATTTAATTTTGGAAACACAAA ] [+] EMBL BM646326 [ ccgATCGGAGCAATGATCTATAAACAAGGATGGGCCCATCCTTGCAAAACCTCCTTCGGGATATGTAGCATAGATTCTGGTTGTTAGCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTATAATGGAGCCGGGGATACTACGTTGGCCAATCTGAATGAAAACCTACGCGGTGTCTCCTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAACGTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACACGATGGCTCTATTCCTTAGCAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTA TTTTAATTATCGACTTTAAACAAAAAAACAGGATTTAATTTTGGAAACACAAAACAACTTGGCAGTAGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGGAAGGAAATACATATGAGTATGTATTAAACACTAAGCCGTGTACAAAATGAAACAGCAAAACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTATGCATAAACAATATTCTAATCCATGCTTTTGGTCCGCTATCTGCTTTATCTTCATGAACTCTTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5961#0 GCTCATGCAGAATCGCCCCNGGTTTTCTAAATGGGGGTCATAATATTTTCCCTTATCTTT 60 consensus_5961#1 ------------------------------------------------------------ consensus_5961#0 TACAGACAAAAAAGTGTCTGGTAAATCCAAGGAGGAACAGATAGACGGAGAAAAAGCAAG 120 consensus_5961#1 ------------------------------------------------------------ consensus_5961#0 AGCTGGAAAAACGGCTCCAGGATGTGACGGGTCAACTAGGCACTGGGAAGAAGAACGCGA 180 consensus_5961#1 ------------------------------------------------------------ consensus_5961#0 AGAAGGACGAAGCCAACAAACAGGATGTTGCGTCCCTCCGGAGGCAACATGTCCTCCAGC 240 consensus_5961#1 ------------------------------------------------------------ consensus_5961#0 AGTAGCTCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCCCAG 300 consensus_5961#1 ------TCCAGTGATTCCTCGTCGTCGAGTTCAAGCGATTCCAGTTCTAGTGATTCC-AG 53 *************************************************** ** consensus_5961#0 CGACAGTGAAGCAGGTTAGGCAAAATCTTCTTTGTTCTAAAAACAAAACAATGANATCAC 360 consensus_5961#1 CGACAGTGAAGC-GGTTAGGCAAAATCTTCTTTGTCT--AAAACAAACAAAATGAATCA- 109 ************ ********************** ******** ** **** consensus_5961#0 CAACTATCCTTGTAAGNGGTGGTTCTCACACTGGNTAACACAGGGGCNCACACACCAACA 420 consensus_5961#1 ---CAATTCT-----GTAGTGTT--------TAAATGATAAAGGAAAAAAAGGAGAAACA 153 * ** ** * *** * * * * * *** * * **** consensus_5961#0 CCGNNGCGCAAACCCAGTTGANCACGCACAACAGNTACACAACAATTAAAACCACTNTTT 480 consensus_5961#1 --GTGACAGAAAGTAAA---ATAACATTTAGCACTTATCGTCCAACTCAGTTTGAAACTT 208 * * *** * * ** * ** ** *** * * ** consensus_5961#0 ACGGCACTATAATTCCGGTGCCCCAAACCTCCCAAGTTCTGCAAACCTCTGGGCAACCAG 540 consensus_5961#1 GAAACAGTG-------GGGGATTGAAG------AGGGGCAGCAA------GGGTAATAGG 249 ** * ** * ** * * * **** *** ** * consensus_5961#0 GTCGGNGCTGGGCATATTCGAACGGAAGGGGCANGGCAAACGGCGTCCGACTTAGCGGAC 600 consensus_5961#1 AGCAGTA--GAGTAAAATCAACCGTAGTCAGCAGATTCACACCCGCCCCCTCTTGCAA-- 305 * * * * * * ** * ** * *** * ** ** * ** consensus_5961#0 GGGGCGAAGGGATANAGAAGCGTTACACANAATCCCNACAACCCCCCGGTGAAAGATTCC 660 consensus_5961#1 ---GTGACCGATTAGTATTGTTTTCCTC-TGATGTTTTTATTCTCACTATTTAAGATTCC 361 * ** * ** * ** * * ** * * * * * ******** consensus_5961#0 CAACGGCCAGGAAATNTTCACACCAAAGCCCCCTCGGGGCA-CACCCCTTAACCTTATTC 719 consensus_5961#1 T-------------TATTCGATGCAAGGTA---TCGGAGCAATGATCTATAAACAAGGAT 405 * *** *** * **** *** * *** * consensus_5961#0 GGGCCCAACGGTTNGGAACCCCC--CGGCATNTACTCAAGNGTACAAATTACTGGGCTNC 777 consensus_5961#1 GGGCCCATCCTTGCAAAACCTCCTTCGGGATATGT-----AGCATAGATTCTGGTTGTTA 460 ******* * * **** ** *** ** * * * * *** * * consensus_5961#0 GTGTNTGACCTCCCCTATGGAGATAAGGTGTANAGCAAATATACCTGTGCCCAGCCGTGA 837 consensus_5961#1 GCAGTTCCGTGCAAGTGTGTTGTAAAAGTGTACAGTTTTCTCTTCCCGGTTCCATTGCTA 520 * * * * ** * ** ***** ** * * * * * consensus_5961#0 CATNATGAGAAAGGGAAAGTATGCCCCCTNTCATTTCACCGGGAA---ATCTGGCCACAC 894 consensus_5961#1 TAATG-GAGCCGGGGATACTACGTTGGCCA--ATCTGAATGAAAACCTACGCGGTGTCTC 577 * *** **** * ** * * ** * * * ** * ** * * consensus_5961#0 CAACGGGGTCAATATACCGGCGNGAAAGGCCAACANTCGGAGTANCCTTAAGTATANGAA 954 consensus_5961#1 CTACGCAACGCTGCTGTCAGTTTGTTGTATGAATCACGTGGACACTGCTATATCTATAAC 637 * *** * * * * ** * * ** * ** * consensus_5961#0 NCN-CGACACAGACGGGANNNGTGGGNACCCCAAANAACACCCNATAGGGAGGNAAACAA 1013 consensus_5961#1 GTAGCTCCACAGAGCATATGCATAGCAACACATAAAAAGTAATGAAAGGAATAAGTACAC 697 * ****** * * * ** * ** ** * *** * *** consensus_5961#0 ANCNCCTGANACCCTTANACCGGCGGGCATTNAATTAGTCAAAGCGGCAACTAACNGGAA 1073 consensus_5961#1 GATGGCTCTATTCCTTAG-CAGAATATTAGCTCGCTTGCAAAGGTGTTAGGTATTTTTAA 756 ** ***** * * * * * ** * * * ** ** consensus_5961#0 TATCCCA--TTGGGNGGTCATNGGGATANNAAACGNGCACANAGCATAGTACCCCCGGGT 1131 consensus_5961#1 TTATCGACTTTAAACAAAAAACAGGAT-TTAATTTTGGAAACACAAAACAACTTGGCAGT 815 * * * ** * **** ** * * * * * * ** ** consensus_5961#0 AGTGNCAAACAAAACAATGGGTNGGATCACGNGTACNACAAACNGAGTNGGGTTNCAACA 1191 consensus_5961#1 AGTATTTAGGGAAGACATAATTGGTGCCATCATCTTGGCGGCAAAAGATGAATAGATAGG 875 *** * ** ** * * ** * ** * * * consensus_5961#0 CACGAANCAACAGAGCACCTGTGTAATCCCCCAAAGTNNTACCCAAATATNGTGGGTCNT 1251 consensus_5961#1 AAGGAAATACATATGAGTATGTATTAAACACTAA-GCCGTGTACAAAATGAAACAGCAAA 934 * *** * * *** * * * * ** * * **** * consensus_5961#0 AAACTAACAACAGTGGGGGCTTAGGNACCCGCGGGCCGGCAAC-TNATAACATTAAACCN 1310 consensus_5961#1 ACACAATTGGCGGAAGCAGACAAGTATTGCTGTCGTCGATGTTGTGGTTATATGGTCTAT 994 * ** * * * * * ** * * ** * * * ** consensus_5961#0 GGATAACTGNGGGCCCAAAAATAACCGTTNTGTAAACAATTTGAAAAAGAACACCCTAAA 1370 consensus_5961#1 GCATAAACAATATTCTAATC-CATGCTTTTGGTCCGCTATCTGCTTTAT--CTTCATGAA 1051 * **** * ** * * ** ** * ** ** * * * * ** consensus_5961#0 AACAGGTGAACGTACGGTACAT 1392 consensus_5961#1 CTCTTACAA------------- 1060 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||