These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence [CCGGCGACCCGGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCGGCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAGGTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGAGGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCGATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGCAGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCACAATCACAACA] [+] EMBL BM576243 [CCGGCGACCCGGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCGGCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGC ] [+] EMBL BX615029 [ GCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAGGTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGAGGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCGATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGCAGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCACAATCACAACA] consensusID : consensus_5969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAGGTTATCGGCGCCTCGGGTGGATTCGGGCGGGGGGCGATGGAGCTTTTCGTTTGCAATAATGCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC] [+] EMBL BM640934 [CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTGGTGGGAACGATTTTTTCGATGACTATTCCATAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATGGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCCAGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGCCGCGGAGGTGGCAGTAGCAGCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACAGTAGCAGTCGAAGGAACGGTCAACCGCAACCAGTCGATAGCAGTGACGTTGCGCAGAAAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGAGCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCGACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAGGTTATCGGCGCCTCGGGTGGATTCGGGCGGGGGGCGATGGAGCTTTTCGTTTGCAATAATGCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC] consensusID : consensus_5969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [ACCCACGCGTCCGCTGGAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGCTACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACCCAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAAATCGGTTAAGGTGGACTCGCTGTACGATCTTACCGACATCTCGGTGCACCAGATGCTGATGGACTTTCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG] [+] EMBL BM581141 [ACCCACGCGTCCGCTGGAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGCTACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACCCAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAAATCGGTTAAGGTGGACTCGCTGTACGATCTTACCGACATCTCGGTGCACCAGATGCTGATGGACTTTCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG] consensusID : consensus_5969#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTCGCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATAGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGCAGG] [+] EMBL BX469656 [ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTCGCTAAAATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAGTGGCAAGGGGGCGGATATGAGCGAAGCGACACAGATAGGGTTCGATACGCTCGAGCCGATCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAAGGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5969#0 --------------------------------------------------CCGGCGACCC 10 consensus_5969#1 ------------------------------------------------------------ consensus_5969#3 ATCGCACGAGGTNNANAGTCACATCGTATCAGCAGACGATCGTGTGACTTGCTGTGATCT 60 consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 GGAGCAGTGCGGCGTCCCTTAGCAAGGCGCTGTACGATCGCGACGATTCGTCCAGTGGCG 70 consensus_5969#1 ------------------------------------------------------------ consensus_5969#3 GTCTGTGTGTAAAGGTTCGTTCCGCGTCTGGAAGTGAGGGTACTAATTGCTC--GCTAAA 118 consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 GCGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGAAGTGGAAGTGGCGGCGGCGGCAGTG 130 consensus_5969#1 -----------------------------CCGGGAAGTGGAAGTGGCGGCGGCGGCAGTG 31 consensus_5969#3 ATGCATCTTCTCCCGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGA 178 consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 GTGGGAA-------CGATTTTTTCGATGACTATTCCA-TAATCTACGGGTTTTCGGGCAG 182 consensus_5969#1 GTGGGAA-------CGATTTTTTCGATGACTATTCCA-TAATCTACGGGTTTTCGGGCAG 83 consensus_5969#3 GCACGGATCCTTTCCGATTTTTTCGATGACTATTCCAGTAATCTACGGGTTTTCGGGCAG 238 consensus_5969#2 ----------------------------------------ACCCACGCGTCCGCTGG-AG 19 * * *** ** * ** ** consensus_5969#0 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATGGGGTTCGATACGCTCGAGCCGA 241 consensus_5969#1 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATGGGGTTCGATACGCTCGAGCCGA 142 consensus_5969#3 TGGCAAGGGGGCGGATATGAGCGAAGCGACACA-GATAGGGTTCGATACGCTCGAGCCGA 297 consensus_5969#2 TCACATCG-------TATCAGCAGACGATCGTGTGACTTGCTGTGATCTGTCTGTGTAAA 72 * ** * *** *** * * ** * * *** * * * * consensus_5969#0 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCC--AGCAGGCGGTAGCTTGAA 299 consensus_5969#1 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGCC--AGCAGGCGGTAGCTTGAA 200 consensus_5969#3 TCGACAGCAAGCGTCCCACGGTGAAGACGATGTTCTCGGCCAGGCAGGCGGTAGCTTGAA 357 consensus_5969#2 GGTTCGTTCCGCGTCTGGAAGTGGGGGGACTAATTGCTCCCTAAAATGCATCTTCTCC-- 130 * ***** *** * * * * * * ** ** consensus_5969#0 GGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGC-CGCGGAGGTGGCAGTAGCA 358 consensus_5969#1 GGGTGGATCGAGCAGTATTAGCGATCAACCCACATACAGC-CGCGGAGGTGGCAGTAGCA 259 consensus_5969#3 GGGTGGATCGAGCAGTATTAGCGATCAAACCCANCATAGC-AGG---------------- 400 consensus_5969#2 CGCTGGTATGTCTTGTTGCTGCCACCGCCCTTCCTACGACGCTTGGAGCACGGATCCTTT 190 * *** * ** ** * * * * * consensus_5969#0 GCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACA 418 consensus_5969#1 GCGGAAGCAACTACAACAACAACAACAACAACAGTAGCAGCAGCAGCAGCAACAACAACA 319 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 CCGTGAATGTGTTCCCGGGGCGTAGCCACTGGATGATGATCAGTAGCATCCTGGAGGAGC 250 consensus_5969#0 GTAGCAGTCGAAGGAACG-GTCAACCGCAACCAGTCGATAGC--AGTGACGTTGCGCAGA 475 consensus_5969#1 GTAGCAGTCGAAGGAACG-GTCAACCGCAACCAGTCGATAGC--AGTGACGTTGCGCAGA 376 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 TACTCGATCGGGGCCATGAGGTGACCGTAATCACCAACTATCCGAGGAAAAGTGCACACC 310 consensus_5969#0 AAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGA 535 consensus_5969#1 AAAAGTTCGGCTCTGCCAAGGGCATCTCGTCCGACCAGTTCTTCGGCGACGAACAGTCGA 436 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 CAAACCTTACCGAGATTGTGATCTCCCCGATCTACGACTTTTGGGGCAA--ATCGGTTAA 368 consensus_5969#0 GCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCG 595 consensus_5969#1 GCTACGAACGGTCGGCCAATCTTTCCAAATTCCAGGGCTCTACCAGCATCTCTTCCGCCG 496 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 GGTG-GACTCGCTGTACGATCTTACCGACATCTCGG--TGCACCAGATGCTGATGGACTT 425 consensus_5969#0 ACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGAGGAGGAG 655 consensus_5969#1 ACTACTTTGGCCACGGCTCGTCATCGATGGGATCGGGCGGTTCTAGATCCGGTAG----G 552 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 TCTGTATCCGCTGGGCCTTCAAACGGCCGAGTATGCGTTCACTCGG-------------- 471 consensus_5969#0 GTGGAGGCGGACCGCGCGGTCCGGCACTGCAGTACAATGGGCCCGATTTGGAGGACGTGA 715 consensus_5969#1 TTATCGGCGCCTCGGGTGGATTCGGGC-GGGGGGCGATGGAGCTTTTCGTTTGCAATAAT 611 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 GGGAAAGCGTCCGGCAGGGCGTTACGAAGGTGGCCGGACGTCTCAGTTCCCTCGCCAGCG 775 consensus_5969#1 GCCATTCCATTCCTTTTCTTGTCCCAAGAAGAGGAGGTGGAGGCGGACC----------- 660 consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 ATGTGATGAACTCGATTCAGGATAAATATGGCTACTGAAGCGCGCGCGCGTGTGTACAGC 835 consensus_5969#1 ------------------------------------------------------------ consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 AGCATCCCGAATGCTGTGGAAGCCGTGCACGGACGTGTCACCTCCTCCAGCATGGATCAC 895 consensus_5969#1 ------------------------------------------------------------ consensus_5969#3 ------------------------------------------------------------ consensus_5969#2 ------------------------------------------------------------ consensus_5969#0 AATCACAACA 905 consensus_5969#1 ---------- consensus_5969#3 ---------- consensus_5969#2 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||