These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [TGGATAAGTCGCCTGTAAACCGAGAAGAGCCAGCACAAGAGTCGTAGTAATATCTAGCATGGGAAATTAACGGAAAAAAAACTATTAAAAAAAACATAAGGAAACTTATTACACATACAATGCTAGCCAATTGTACGAAAGCGATAAGTATCGGGCAATGAAGGAGGGAGGGGAAAACAAAACATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGCATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAGTTTTGAAGAGCAGAAAAACAGGGAACAGGGAAAAGACACAGACAGGCCAGGGCCCAACACAGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACGAAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTTGTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTA] [+] EMBL BX614340 [TGGATAAGTCGCCTGTAAACCGAGAAGAGCCAGCACAAGAGTCGTAGTAATATCTAGCATGGGAAATTAACGGAAAAAAAACTATTAAAAAAAACATAAGGAAACTTATTACACATACAATGCTAGCCAATTGTACGAAAGCGATAAGTATCGGGCAATGAAGGAGGGAGGGGAAAACAAAACATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGCATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAGTTTTGAAGAGCAGAAAAACAGGGAACAGGGAAAAGACACAGACAGGCCAGGGCCCAACACAGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACGAAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTTGTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTA] consensusID : consensus_597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [ATGCTAGCCAATTGTACGAAAGCGATAAGTATCGGACAATGAAGGAGGGAGGGGAAAACAAAAGCATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGCATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAGTTTTGAAGAGCAGAAAAACAGGGAACAGAGGAAAGACACAGACAGGCCAGGGCCCAACACAGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACGAAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTTGTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGTGCACCCGTGTAATGGATATACAACTTCGGAAGGGTAAACAATAAA] [-] EMBL BX616071 [ATGCTAGCCAATTGTACGAAAGCGATAAGTATCGGACAATGAAGGAGGGAGGGGAAAACAAAAGCATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGCATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAGTTTTGAAGAGCAGAAAAACAGGGAACAGAGGAAAGACACAGACAGGCCAGGGCCCAACACAGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACGAAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTTGTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGTGCACCCGTGTAATGGATATACAACTTCGGAAGGGTAAACAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_597#0 TGGATAAGTCGCCTGTAAACCGAGAAGAGCCAGCACAAGAGTCGTAGTAATATCTAGCAT 60 consensus_597#1 ------------------------------------------------------------ consensus_597#0 GGGAAATTAACGGAAAAAAAACTATTAAAAAAAACATAAGGAAACTTATTACACATACAA 120 consensus_597#1 -----------------------------------------------------------A 1 * consensus_597#0 TGCTAGCCAATTGTACGAAAGCGATAAGTATCGGGCAATGAAGGAGGGAGGGGAAAACAA 180 consensus_597#1 TGCTAGCCAATTGTACGAAAGCGATAAGTATCGGACAATGAAGGAGGGAGGGGAAAACAA 61 ********************************** ************************* consensus_597#0 AA-CATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGC 239 consensus_597#1 AAGCATGGAAATAGAAAACATAAAACAGTGTAACGAAATCGAAGATGAAAACAGGAAAGC 121 ** ********************************************************* consensus_597#0 ATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAG 299 consensus_597#1 ATGGGGAAACGAAGATTAGTTCATCGAAAGAAACGTACGTGAACCGCGTTACGGAACAAG 181 ************************************************************ consensus_597#0 TTTTGAAGAGCAGAAAAACAGGGAACAGGGAAAAGACACAGACAGGCCAGGGCCCAACAC 359 consensus_597#1 TTTTGAAGAGCAGAAAAACAGGGAACAGAGGAAAGACACAGACAGGCCAGGGCCCAACAC 241 **************************** * ***************************** consensus_597#0 AGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACG 419 consensus_597#1 AGAGAATGAATGCTGTACGACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTACG 301 ************************************************************ consensus_597#0 AAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTT 479 consensus_597#1 AAATGTGGAATGCAAGAAAACCAGAAAGCGCAATCGTGCATGTGTCGTGCGTGGTGCGTT 361 ************************************************************ consensus_597#0 GTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGAATGCT-GTACG 538 consensus_597#1 GTACGGTGTTGGTGATAAAGCAGTAAAGAACTTTACACCCTGAAAATGTGCACCCGTGTA 421 ************************************************ * ** consensus_597#0 ACATACCCACTTTATGAGAGAAAATGAGAATGAGTTGTA 577 consensus_597#1 ATGGATATACAACTTCGGAAGGGTAAACAATAAA----- 455 * * ** * ** * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||