cluster # 5970

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5970 cluster # 5970 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5970#0 length = 965 sequences # 3

consensus_5970#1 length = 669 sequences # 1
consensus_5970#2 length = 343 sequences # 1

consensusID : consensus_5970#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 965
fasta sequence

                              [TGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGGGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCGCTGCCAGGCATCCTTATAGCCCGTTGGCAGAACAAGTGAAGAAAGCAAATAATTTCACAATTACGAATTGTCGAAACACCGTTTCGATTGGATGCCCATTTGGTGTTACATATGTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGTGTTTGATGTTTATGTTGCTGAACTGTATTTAACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTGAGAATCTATAAACTGTAACGAAGTGAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTGCTAATTATGATGTAAAACACAACGCAATTAAATGCAAAATGTACGAAATGAACAAGAAATAAACAATGAATTTGAAACAAAAAAAAAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGGCGG]

[+] EMBL BX609428             [TGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGGGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCGCTGCCAGGCATCCTTATAGCCCGTTGGCAGAACAAGTGAAGAAAGCAAATAATTTCACAATTACGAATTGTCGAAACACCGTTTCGATTGGATGCCCATTTGGTGTTACATATGTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGTGTTTGATGTTTATGTTGTTGAACTGTATTTAACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTGA                                                                                                                                                                                        ]
[+] EMBL BX612087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGGGTTTGATGTTTATGTTGCTGAACTGTATTTAACTCGAACCCCGCC                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS09JXC             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atcctTTTTCTTATTTGAGCAATCGAGAAATCGTGTTTGATGTTTATGTTGCTGAACTGTATTTAACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTGAGAATCTATAAACTGTAACGAAGTGAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTGCTAATTATGATGTAAAACACAACGCAATTAAATGCAAAATGTACGAAATGAACAAGAAATAAACAATGAATTTGAAACAAAAAAAAAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCGGGCGG]




>consensus_5970#0
TGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGGGCAGCACGGGCACATCAA
AGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCAC
ACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATA
CAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTG
CGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGG
CAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGG
TGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGG
AAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCGCTGCCAGGCATCCT
TATAGCCCGTTGGCAGAACAAGTGAAGAAAGCAAATAATTTCACAATTACGAATTGTCGA
AACACCGTTTCGATTGGATGCCCATTTGGTGTTACATATGTACCAGGTTTTGTTCTTTGA
GCAATCGAGAAATCGTGTTTGATGTTTATGTTGCTGAACTGTATTTAACTCGAACCCCGC
CCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCC
CATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTG
AGAATCTATAAACTGTAACGAAGTGAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTG
CTAATTATGATGTAAAACACAACGCAATTAAATGCAAAATGTACGAAATGAACAAGAAAT
AAACAATGAATTTGAAACAAAAAAAAAAAAAAAAAAACAAAAAAAGGCCACATGTGCTCG
GGCGG

consensusID : consensus_5970#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CAAAGGAGAAATGGTTGATTGCGCGTGGCCCTTTAATTGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGAGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCATTCATCATACCATATCGGCTGGACTGCTGAACTGCGAATTGAACCGATTCGTAGAACTATTCCTGCCACACGACCATGGTCTCCATCCAGTTGTCGGGTTTTCCCACAGGATATGGCGGGACGGCGACGTACGTGGTGGTTGTGTGCGCGCAATATAATAGACTTT]

[+] EMBL BX610321             [CAAAGGAGAAATGGTTGATTGCGCGTGGCCCTTTAATTGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGAGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCATTCATCATACCATATCGGCTGGACTGCTGAACTGCGAATTGAACCGATTCGTAGAACTATTCCTGCCACACGACCATGGTCTCCATCCAGTTGTCGGGTTTTCCCACAGGATATGGCGGGACGGCGACGTACGTGGTGGTTGTGTGCGCGCAATATAATAGACTTT]




>consensus_5970#1
CAAAGGAGAAATGGTTGATTGCGCGTGGCCCTTTAATTGAATATTAAAGCCTACGGATAC
GCGCACGCACACAAGCAGAGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCG
AACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAG
CGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATC
GCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACG
ACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTAC
GCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAGA
CTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGCA
TCCAGTAAACAAATGCCAAACCATTCATCATACCATATCGGCTGGACTGCTGAACTGCGA
ATTGAACCGATTCGTAGAACTATTCCTGCCACACGACCATGGTCTCCATCCAGTTGTCGG
GTTTTCCCACAGGATATGGCGGGACGGCGACGTACGTGGTGGTTGTGTGCGCGCAATATA
ATAGACTTT

consensusID : consensus_5970#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [CTGTTGGCCTTCTGGGTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGTGTTTGATGTTTATGTTGCTGGACTGTATTTTACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTGAGAATCTATAAACTGTAACGAAGTGAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTGCTAATTATGATGTAAAACACAACGCAATTAAATGCAAAATGTACGAAATACGCCCCCACACGCCTTC]

[-] EMBL CNS09JXD             [CTGTTGGCCTTCTGGGTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGTGTTTGATGTTTATGTTGCTGGACTGTATTTTACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATTTTGAGCCCTATATATTGAGAATCTATAAACTGTAACGAAGTGAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTGCTAATTATGATGTAAAACACAACGCAATTAAATGCAAAATGTACGAAATACGCCCCCACACGCCTTC]




>consensus_5970#2
CTGTTGGCCTTCTGGGTACCAGGTTTTGTTCTTTGAGCAATCGAGAAATCGTGTTTGATG
TTTATGTTGCTGGACTGTATTTTACTCGAACCCCGCCCGAATCACCCCATGACCCTTTTC
TCAAATCCCGTCTCCCGCTATACCTGCCATCCATCCCATTCTCATCTCCCAGTGTACTAC
TGTGCATCGCTAAATGATTTTGAGCCCTATATATTGAGAATCTATAAACTGTAACGAAGT
GAAAAGTGCATACGAGTTGTTCTGAGATTTTTTCTGCTAATTATGATGTAAAACACAACG
CAATTAAATGCAAAATGTACGAAATACGCCCCCACACGCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5970#0      TGAATATTAAAGCCTACGGATACGCGCACGCACACAAGCAGGGCAGCACGGGCACATCAA 60
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      AGGACTTTTCATTTCGATTAGCGAACCATCCCTTCACAACCCACCCACCAACACACGCAC 120
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      ACGCACAGACACACGCTGTACAGCGCCCTACCGACTGGCACAAAAACGTCGATGCGCATA 180
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      CAAACAAAAATACGCGACCCATCGCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTG 240
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      CGAACGCACCAGCCCCACGAACGACCTCTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGG 300
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      CAAAGCCTATTGCCAAACGGTACGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGG 360
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      TGTCCCCGTCTTGCTGCGCAAGACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGG 420
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      AAAGCTCTGCCGCTAGTGCGGCATCCAGTAAACAAATGCCAAACCGCTGCCAGGCATCCT 480
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      TATAGCCCGTTGGCAGAACAAGTGAAGAAAGCAAATAATTTCACAATTACGAATTGTCGA 540
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ------------------------------------------------------------
                                                                                  

consensus_5970#0      AACACCGTTTCGATTGGATGCCCATTTGGTGTTAC-ATATGTACCAGGTTTTGTTCTT-T 598
consensus_5970#2      ----------------------CTGTTGGCCTT---CTGGGTACCAGGTTTTGTTCTT-T 34
consensus_5970#1      CAAAGGAGAAATGGTTGATTGCGCGTGGCCCTTTAATTGAATATTAAAGCCTACGGATAC 60
                                               * *   **    *   **  *     *     *  

consensus_5970#0      GAGCAATCG-AGAAATCGTGTTTGATGTTTATGTTGCTGAACTGT--ATTTAACT---CG 652
consensus_5970#2      GAGCAATCG-AGAAATCGTGTTTGATGTTTATGTTGCTGGACTGT--ATTTTACT---CG 88
consensus_5970#1      GCGCACGCACACAAGCAGAGCAGCACGGGCACATCAAAGGACTTTTCATTTCGATTAGCG 120
                      * ***  *  * **   * *    * *   *  *    * *** *  ****   *   **

consensus_5970#0      AACC---CCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATAC-- 707
consensus_5970#2      AACC---CCGCCCGAATCACCCCATGACCCTTTTCTCAAATCCCGTCTCCCGCTATAC-- 143
consensus_5970#1      AACCATCCCTTCACAACCCACCCACCAACACACGCACACGCACAGACACACGCTGTACAG 180
                      ****   **  *  ** *  ****  * *     * **    * * * * **** ***  

consensus_5970#0      ----CTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATT 763
consensus_5970#2      ----CTGCCATCCATCCCATTCTCATCTCCCAGTGTACTACTGTGCATCGCTAAATGATT 199
consensus_5970#1      CGCCCTACCGACTGGCACAAAAACGTCGATGCGCATACAAACAAAAATACGCGACCCATC 240
                          ** **  *   * **    * **     *  *** *      **     *   ** 

consensus_5970#0      TTGAGCCCTA-TATATTGAGAATCTATAAACT-GTAACGAAGTGAAAAGT---GCATACG 818
consensus_5970#2      TTGAGCCCTA-TATATTGAGAATCTATAAACT-GTAACGAAGTGAAAAGT---GCATACG 254
consensus_5970#1      GCGCACGCAACTACTCCCCGCTTCCATGGCCCCGGTGCGAACGCACCAGCCCCACGAACG 300
                        *  * * * **      *  ** **   *  *   ****   *  **     *  ***

consensus_5970#0      AGTTGTTCTGAGATTTTT-TCTGCTAATTATG---ATGTAAAACACAACGCAATTAAATG 874
consensus_5970#2      AGTTGTTCTGAGATTTTT-TCTGCTAATTATG---ATGTAAAACACAACGCAATTAAATG 310
consensus_5970#1      ACCT-CTCTGTCATTGTCGTCCCCTGTTTGTGTGTAGGCAAAGCCTATTGCCAAACGGTA 359
                      *  *  ****  *** *  **  **  ** **   * * *** *  *  ** *     * 

consensus_5970#0      CAAAATGT-ACGAAATGAACAAGAAATAAACAATGAATTTGAAACAAAAAAAAAAAAAAA 933
consensus_5970#2      CAAAATGT-ACGAAATACGCCCCCA-CACGCCTTC------------------------- 343
consensus_5970#1      CGCACCGAGACAAACGGCACTTCTTCCGTGCTTGGGGGTGTCCCCGTCTTGCTGCGCAAG 419
                      *  *  *  ** **     *          *                             

consensus_5970#0      AAAACAAAAAAAGGCCACATGTGCTCGGGCGG---------------------------- 965
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ACTGGGGTTTTCCATAGAATTAATTATAGGAAAAGGGGAAAGCTCTGCCGCTAGTGCGGC 479
                                                                                  

consensus_5970#0      ------------------------------------------------------------
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      ATCCAGTAAACAAATGCCAAACCATTCATCATACCATATCGGCTGGACTGCTGAACTGCG 539
                                                                                  

consensus_5970#0      ------------------------------------------------------------
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      AATTGAACCGATTCGTAGAACTATTCCTGCCACACGACCATGGTCTCCATCCAGTTGTCG 599
                                                                                  

consensus_5970#0      ------------------------------------------------------------
consensus_5970#2      ------------------------------------------------------------
consensus_5970#1      GGTTTTCCCACAGGATATGGCGGGACGGCGACGTACGTGGTGGTTGTGTGCGCGCAATAT 659
                                                                                  

consensus_5970#0      ----------
consensus_5970#2      ----------
consensus_5970#1      AATAGACTTT 669