These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 893 fasta sequence [CTGTTGGCCTACTGGTCATTTGAGCGGAAGGGGAGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAG-AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC-TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT-CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC-GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGATAAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG] [-] EMBL CNS09K88 [CTGTTGGCCTACTGGTCATTTGAGCGGAAGGGGAGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCT GATTCAACAGAGGGGAAAG AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAAT ] [+] EMBL CNS09LAD [ AGCACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAGCAGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCCTTTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTTACATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGCGGGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGCTTTGTTTGTAAGAAGTAA ] [+] EMBL CNS09K87 [ CACCGGACAGCAGGCGAAGTTACGCGGCGTGCGAACCACCGGAGTTGTGACGTGAAGAGGAGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATTTGATTTGATTTTTTTTTTCGCTGGATTCAACAGAGGGGAAAG AGAATGGAGCCAGGAAGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTCAAATTTCATCGTGCTCTGTATCGTTTATTTTTTAACTCCC TTTTTTGTCCTACCTTTTGGAAAATGATTCCGCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTAAGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGATAAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG] [-] EMBL CNS09LAE [ ACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTTAAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTTCTTTT CATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGC GGCTCACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGCTTTGTTTGTAAGAAGTAATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAGCGAGGGGGAAGAGAAGTAAACGAACACGAGAAAAGTTATTACCACTACCTCCCTTCGAAATAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAAAAAGAAAAGAAGGTAATTTTTGCTGCTTGCGACAAAGTGTGT ] consensusID : consensus_5973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCGGGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAGTTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGATTTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCAGGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGTGCCTCTGT] [+] EMBL BX619798 [CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCGGGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAGTTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGATTTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCAGGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGTGCCTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5973#0 -------------------------------CTGTTGGCCTA---CTGGTCATTTGAGCG 26 consensus_5973#1 CGNGTTCCATCACTNGTTATTGACAACTTTCCCAGCAACATAAACTTAATCATTTGAGCG 60 * * ** * *********** consensus_5973#0 GAA--GGGGAGCACCGG-ACAGCAGGCG-AAGTTACGCGGCGTGCGAA--CCACCGG-AG 79 consensus_5973#1 GGAAGGGGGAGCACCGGGACAGCAGGCGGAAGTTACGCGGCGTGCGGAGACCACCGGGAG 120 * * ************ ********** ***************** * ******* ** consensus_5973#0 TTGTGACGTGAAGAGGAGA---ACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGATT 136 consensus_5973#1 TTGTGACGTNNAGGAGGGAGGAACACGGCCGTTTGCATGTTCGTACTAAATGTTCCGGAT 180 ********* ** * ** *********************************** * consensus_5973#0 T--GATTTGATTTTTTTTTTCGCTGGA-TTCAACAGAGGGGAAA---GAGAATGGAGCCA 190 consensus_5973#1 TTGGATTTGATTTTTTTTTTCGCTGGNATTCAACAGGAGGGGNAAAGNAGAATGGAGCCA 240 * *********************** ******** *** * ************ consensus_5973#0 GGAA--GAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTC-AAATTTCATCGT 247 consensus_5973#1 GGGAAGGAGTAGTTTTTTAATTGTGTTTAATGTTTCTTTTCATGTTNCAAATTTCATCGT 300 ** * **************************************** ************ consensus_5973#0 GC-TCTGTATCGTTTATTTTTTAACTCCCTTTTTTGTCCTACCTTTTGGAAAATGATTCC 306 consensus_5973#1 GCCTCTGT---------------------------------------------------- 308 ** ***** consensus_5973#0 GCTTTTCATTACTATTTTTACAACCATTAATTCTATTTTGATAATTTGATTTTTGTGTTT 366 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 AAGTTTACTACGTGTCTTTTTTCCACTGTTCGTTTAATCTTTAACTGTAGAAGTAACGTT 426 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 CTTTTCATTCCAAGTATTAGTACTTTGATTCATTCGACGTTAGGTTGTACCTCTGCGGCT 486 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 CACTGCGCAGTGTGTGCGACTTGAAATCTACGATTTTAAAGTGTTTTGTTTGTAAGAAGT 546 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 AATGTTAACCCTGCATATCATGTCATAAATTCAACAAGTTAAGAGCAAAACCACTAAGAG 606 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 CGAGGAGGAAGAGAAGTAAACGAACACGAGAAAAGTAACTACCACTACCTCCCTTCGAAA 666 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 TAGTTCTGTTCGTCATATGGTAGGGCGCGCATACTTTATGACACGCAAGTGTCACGAGAA 726 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 AAAGAAAAGAAGGTAATCTCTGCTGCTTGCGACAAAGTGTGTGTGGCACGTGAGAGTTTA 786 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 AGGGCTACGAAAAAGGATCTTGTATATGTTAAGTTAAACTTCGACGAATGAAAGAGAGAT 846 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 AAACACTAGCAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGG 893 consensus_5973#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||