These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 932 fasta sequence [TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGTTTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATC-TTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAATTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT] [+] EMBL CNS09JLI [TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGTTTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATC TTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAATTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT] [-] EMBL CNS09JLJ [ TTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTAGTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCGTTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCAACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGG TTCGT ] [+] EMBL BM622677 [ aGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAACAGCAGGGCAAAATAATGGAAGCCCTGCACAAGCTGAAGGAAGGCCACGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGTGGCGATCTCGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCAGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATACCATATTATAATGGT ] consensusID : consensus_5974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CGCACCCGCCGTCAGTTTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG] [-] EMBL BM657163 [CGCACCCGCCGTCAGTTTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG] [-] EMBL BM612713 [ GCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5974#0 TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGT 60 consensus_5974#1 --------------------------------------------CGCACCCGCCGTCAGT 16 *************** consensus_5974#0 TTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCG 120 consensus_5974#1 TTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCG 76 ********** ************************************************* consensus_5974#0 TCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCG 180 consensus_5974#1 TCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCG 136 ******************************************************** *** consensus_5974#0 CTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGA 240 consensus_5974#1 CTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGA 196 ************************************************************ consensus_5974#0 TCTTCATCGTTTAGTCCCGGCATTTGAAAGCACT---GACCGAGC-----GAGAAATTGA 292 consensus_5974#1 TCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGG 256 *************** ****************** * ** ** * * * consensus_5974#0 CATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCG 352 consensus_5974#1 CCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTG 316 * *** * * ** * ** * * * * ** * * * * *** * consensus_5974#0 ATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAAC 412 consensus_5974#1 TTGGCGAGAAATT-CGGACATACT--TTGTTGCC--CTTTGGCACGGTCGTAGATCCATT 371 ** * * *** ** * * * *** ** ** * * * * * *** consensus_5974#0 GCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGA-TGCCACCGAAAAAGG 471 consensus_5974#1 GCG--AGGCGTCGGTGGG--CGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAG 427 ** ** *** ** * * ** * * * * *** **** * * consensus_5974#0 ATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCG 531 consensus_5974#1 TCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTG 487 * * * * * * * ** * * * * * * ** *** * consensus_5974#0 CTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGAC-ACATC 590 consensus_5974#1 CCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATA 547 * * * * * * * ** **** * **** **** consensus_5974#0 CTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCG 650 consensus_5974#1 CAGCAC---ACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGA-GGATTTCGTTCAG--- 600 * * * * * * ** * * * ** ** * * * *** consensus_5974#0 TTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGG 710 consensus_5974#1 --CATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG-------- 650 * * * * * ** * *** *** * * * * * consensus_5974#0 TGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATC 770 consensus_5974#1 ------------------------------------------------------------ consensus_5974#0 TCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCAT 830 consensus_5974#1 ------------------------------------------------------------ consensus_5974#0 ATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAA 890 consensus_5974#1 ------------------------------------------------------------ consensus_5974#0 TTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT 932 consensus_5974#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||