These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTAAACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT-TGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAATCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC] [-] EMBL CNS090M5 [GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTAAACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT TGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTG ] [+] EMBL CNS090M6 [ AAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTTTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTCCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTTCTGCTCGCGC CAGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGG ACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAATCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC] consensusID : consensus_5980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 723 fasta sequence [AGCTGCAACAGCTCTCCCGACCGGCTATCCTTCAGGATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCCCACGCGTCCGCGG] [-] EMBL BM603661 [AGCTGCAACAGCTCTCCCGACCGGCTATCCTTCAGGATGGACGTATCATTGTCCTCCTCTTCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCCCACGCGTCCGCGG] [-] EMBL BM588195 [ TGCTCGATAAACTCCCGCTTGCGCTGCACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCgg ] [-] EMBL BX629127 [ TCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTCTTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTCTGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGCTTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTTCTGCTCGCGCAGCGGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCCAGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGTTCCACGGTGCCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGACGCGATGCTTTCCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGAGCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAGCAGACGGGTGAGGAAACTTTTGTTAAACTCGTACACTTCCATCTcc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5980#0 GGGGGCCGGCAGCTCGAGCACATGTGGCCTTTTTTTTTTTTTTTTTTTGTGTTACATTTA 60 consensus_5980#1 -------------------------------------------------------AGCTG 5 * * consensus_5980#0 AACAAACTTGTATTTATGCGCTACATCGAAAAGAGAATGGACGTATCATTGTCCTCCTCT 120 consensus_5980#1 CAACAGCTC-TCCCGACCGGCTATCCT----TCAGGATGGACGTATCATTGTCCTCCTCT 60 * * ** * * **** ** ************************ consensus_5980#0 TCCTCCTCCTGCCCATCCTCCTCGCTAAGCTCCTGCTCGATAAACTCGCGCTTGCGCTGC 180 consensus_5980#1 TCCTCCTCCTGTCCATCCTCCTCGCTCAGCTCCTGCTCGATAAACTCCCGCTTGCGCTGC 120 *********** ************** ******************** ************ consensus_5980#0 ACGTACCGCGCTTCCGCGAGCAATGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTT 240 consensus_5980#1 ACGTACCGCGCTTCCGCGAGCAAGGCCAGCGCGTGGGAGGAAAGCTGCCGCGACATGGTC 180 *********************** *********************************** consensus_5980#0 TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC 300 consensus_5980#1 TTGTTCTTCAGATCGTGACAGAACCGGATGCGCGATTCCAGATGCTTCTCGATCCAGTTC 240 ************************************************************ consensus_5980#0 TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC 360 consensus_5980#1 TGCTCATCCTCCGTATCGGTGTCCCACGGCATCCAGAGATGCTGGTAGAAAAACCGCAGC 300 ************************************************************ consensus_5980#0 TTATCGATACAGTCGGCCGTAATGTTGACGTTCAGGGCGGGGTTGTT-TGCTCGCGCAGC 419 consensus_5980#1 TTATCGATACAGTCGGCCGTAATGTTGACGTTTAGGGCGGGGTTGTTCTGCTCGCGCAGC 360 ******************************** ************** ************ consensus_5980#0 GGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCC 479 consensus_5980#1 GGCCACAGCTCCTCCAGCTGCACCGTACACTGCTCCTCCGGCAGATGCACATCATCGTCC 420 ************************************************************ consensus_5980#0 AGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTG 539 consensus_5980#1 AGGATGGCTTCGATGAGGAAGACGGCCTTCAGCTCGTCGAACAGTACCTGGTCCACGGTG 480 ************************************************************ consensus_5980#0 CCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGAACGCGATGCTTT 599 consensus_5980#1 CCCAGCACGACGAGCGGGTACTTTACGCCGAGCTGCTCGCATACCGGA-CGCGATGCTTT 539 ************************************************ *********** consensus_5980#0 CCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGA 659 consensus_5980#1 CCACAGCGCCTGCCAGCCGGTCGGCTCTACGGCCACCTCCACGAAATTGATCCATTCCGA 599 ************************************************************ consensus_5980#0 GCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAG 719 consensus_5980#1 GCGGATGGCGGATGCGGGAATGTTGGAACCGCCACCGTTCAGCACGTTGGTCGTCTCGAG 659 ************************************************************ consensus_5980#0 CAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGTTGTGATCGAA 779 consensus_5980#1 CAGACGGGTCAGGAAACTTTTGTTAAACTCGTACACTTCCATCTTTGTGCC-CACGCGTC 718 ************************************************* ** consensus_5980#0 TCCAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTTAGAGTAAGTACCC 837 consensus_5980#1 CGCGG----------------------------------------------------- 723 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||