cluster # 5984

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Anopheles gambiae
cluster # 5984 cluster # 5984 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5984#0 length = 546 sequences # 4

consensus_5984#1 length = 181 sequences # 1

consensusID : consensus_5984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 546
fasta sequence

                              [CCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTT-CGGGCGAGAAAATGTTACGAAAATCGTTCGCCGCGCTGGTTCCGCTTGCGGGCACTTGCGGGCGCCCCCTGCACACAACGGCCGTGTGCAGCGAGATTCGCAAAATGGCACGGCTGCGCGTGGTAGACAACAGTGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACCGCCCAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAAGAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCAAAGGGGGCGGACTACACGAAGCTGCTCGGTATAGCTAGTAGATTTGTTTAATAAATCAAAAAGTTTGTTGGTTTTACAGG]

[+] EMBL BM584603             [CCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTT CGGGCGAGAAAATGTTACGAAAATCGTTCGCCGCGCTGGTTCCGCTTGCGGGCACTTGCGGGCGCCCCCTGCACACAACGGCCGTGTGCAGCGAGATTCGCAAAATGGCACGGCTGCGCGTGGTAGACAACAGTGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACCGCCCAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAAGAA GGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCAAAGGGGGCGGACTACACGAAGCTGCTCGGTATAGCTAGTAGATTTGTTTAATAAATCAAAAAGTTTGTTGGTTTTACAGG]
[+] EMBL BM579021             [      ccgCGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTT CGGGCGAGAAAATGTTGCGAAAATCGTTCGCTGCGCTGGTTCCGCTTGCGGGCACTTCC   CGCCCCCTGCACACGACGGCTGTGTGCAGCGAGATTCGCAAAATGGCACGACTGCGCGTGGTAGACAACAGCGAGATCGGCAAGCGAGCCATGGCGGAGGGCAAACCGCCCAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAAGAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCCAAGTGCGCGGACTACACGAAGCTGCTCGGTATAGCTAGTAGATTTGTTTAATAAATCAAAAAGTTTGTTGGTTTTACAGG]
[+] EMBL BM634402             [                                  GCGCAAACGTTTT CGGGCGAGAAAATGTTACGAAAATCGTTCGCCGCGCTGGTTCCGCTTGCGGGCACTTGCGGGCGCCCCCTGCACACAACGGCCGTGTGCAGCGAGATTCGCAAAATGGCACGGCTGCGCGTGGTAGACAACAGTGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACCGCCCAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAAGAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCAAA                                                                              ]
[+] EMBL BM619456             [                                      ccgCGTTTTCCGGGTGAAAAAATGTTGCGCAAATCGTTCGCCGCGCTGGTTCCGCTAGCGGGCACTTCC   CGTCCCCTGCACACGACGGCCGTGTGCAGCGAGATTCGTAAAATGGCACGGCTGCGCGTGGTAGACAACAGCGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACCGCCTAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAAGAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCGAAGGGGGCGGACTACACGAAGCTGCTCGGTATAGCTAGT                                         ]




>consensus_5984#0
CCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTTCGGGCGAGAAAAT
GTTACGAAAATCGTTCGCCGCGCTGGTTCCGCTTGCGGGCACTTGCGGGCGCCCCCTGCA
CACAACGGCCGTGTGCAGCGAGATTCGCAAAATGGCACGGCTGCGCGTGGTAGACAACAG
TGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACCGCCCAAGTGCATTCACGTGTACAA
CAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCTGGTAGCGATCAAGGGGCAGAAGAA
GAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAAGCCCAAGATACCCAAGTTCGACAG
CAACAATCTGGTGCTGATCGACGACAACGGGACACCGCTCGGCACGCGCATTCACGTGCC
CATCCCGACCATCCTGCGCACGATACTGAAGGAGAAAACGCAGGCAAAGGGGGCGGACTA
CACGAAGCTGCTCGGTATAGCTAGTAGATTTGTTTAATAAATCAAAAAGTTTGTTGGTTT
TACAGG

consensusID : consensus_5984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [CCGTTCCCCGCCTGTCCCAGTGGCCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTTCCGGGTGAAAAAATGTTGCGCAAATCGTTCGCCGCGCTGGTTCCGCTAGCGGGCACTTCCCGTCCCCTGCACACGACGGCCGTGTGCAGCGAGATTCGTAAAATGGCACGG]

[+] EMBL BM611086             [CCGTTCCCCGCCTGTCCCAGTGGCCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCGCAAACGTTTTCCGGGTGAAAAAATGTTGCGCAAATCGTTCGCCGCGCTGGTTCCGCTAGCGGGCACTTCCCGTCCCCTGCACACGACGGCCGTGTGCAGCGAGATTCGTAAAATGGCACGG]




>consensus_5984#1
CCGTTCCCCGCCTGTCCCAGTGGCCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCG
CAAACGTTTTCCGGGTGAAAAAATGTTGCGCAAATCGTTCGCCGCGCTGGTTCCGCTAGC
GGGCACTTCCCGTCCCCTGCACACGACGGCCGTGTGCAGCGAGATTCGTAAAATGGCACG
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5984#0      -----------------------CCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCG 37
consensus_5984#1      CCGTTCCCCGCCTGTCCCAGTGGCCGCGGTTACGCAAAATCGTTTCCAAAACTCCGGGCG 60
                                             *************************************

consensus_5984#0      CAAACGTTTTC-GGGCGAGAAAATGTTACGAAAATCGTTCGCCGCGCTGGTTCCGCTTGC 96
consensus_5984#1      CAAACGTTTTCCGGGTGAAAAAATGTTGCGCAAATCGTTCGCCGCGCTGGTTCCGCTAGC 120
                      *********** *** ** ******** ** ************************** **

consensus_5984#0      GGGCACTTGCGGGCGCCCCCTGCACACAACGGCCGTGTGCAGCGAGATTCGCAAAATGGC 156
consensus_5984#1      GGGCACTTCC---CGTCCCCTGCACACGACGGCCGTGTGCAGCGAGATTCGTAAAATGGC 177
                      ******** *   ** *********** *********************** ********

consensus_5984#0      ACGGCTGCGCGTGGTAGACAACAGTGAGATCGGCAAGCGGGCCATGGCGGAGGGCAAACC 216
consensus_5984#1      ACGG-------------------------------------------------------- 181
                      ****                                                        

consensus_5984#0      GCCCAAGTGCATTCACGTGTACAACAAGCAGAGCGTGGGCATGATCGGCGACAAGGTGCT 276
consensus_5984#1      ------------------------------------------------------------
                                                                                  

consensus_5984#0      GGTAGCGATCAAGGGGCAGAAGAAGAAGGGCATCCTGGTCGGGTGCAAGCAGTTCCAGAA 336
consensus_5984#1      ------------------------------------------------------------
                                                                                  

consensus_5984#0      GCCCAAGATACCCAAGTTCGACAGCAACAATCTGGTGCTGATCGACGACAACGGGACACC 396
consensus_5984#1      ------------------------------------------------------------
                                                                                  

consensus_5984#0      GCTCGGCACGCGCATTCACGTGCCCATCCCGACCATCCTGCGCACGATACTGAAGGAGAA 456
consensus_5984#1      ------------------------------------------------------------
                                                                                  

consensus_5984#0      AACGCAGGCAAAGGGGGCGGACTACACGAAGCTGCTCGGTATAGCTAGTAGATTTGTTTA 516
consensus_5984#1      ------------------------------------------------------------
                                                                                  

consensus_5984#0      ATAAATCAAAAAGTTTGTTGGTTTTACAGG 546
consensus_5984#1      ------------------------------