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Anopheles gambiae
cluster # 5992 cluster # 5992       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5992#0 length = 963 sequences # 2  
consensus_5992#1 length = 777 sequences # 3  

consensusID : consensus_5992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 963
fasta sequence
                              [TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA--ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA]

[+] EMBL CNS08JYN             [TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA  ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CNS09869             [                           TGGAATTGGG AAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAAACACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACGCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA]


>consensus_5992#0 TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAA GGACATCGTTGGAAAACGGGAAAACACACACACACTCACACATTCCTTTGGAAATCGTTC ATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGC AGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGC AACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAG TTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGT TGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTT ACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAG CAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGC AAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAA TTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCC CGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGA CGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCT TTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGG CTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTG GTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATT GGA



consensusID : consensus_5992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 777
fasta sequence
                              [AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG]

[+] EMBL CNS08JYO             [AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGCAGGATTTTCCTGTCAGCACGCGCCGACATTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACTAGCGATC                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS0986A             [        ATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGC CTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGACGGATCTAAAAAGTGGTACATTATACCAGCGATTATTATCACGAAATAAAT                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BM635417             [                                                                                                 AGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG]


>consensus_5992#1 AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTG CTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAA ATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCAC TAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAA TACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGC ATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTG GTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTT GCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGC CAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTT GTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGAT AGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGC GTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTT CTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5992#0      TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAA 60
consensus_5992#1      ------------------------------------------------------------
                                                                                  

consensus_5992#0      GGACATCGTTGGAAAACGGGAAAACACACACACACTCACACATTCCTTTGGAAATCGTTC 120
consensus_5992#1      ----------------------------------------------------AAAGTTTT 8
                                                                          **   ** 

consensus_5992#0      ATTCAGACCGTTAGTCGTTACTTTATAATATTCAGT-TATACAAAATGGACCGTTGTG-- 177
consensus_5992#1      ATTC------TCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCT 62
                      ****      *   ** * *   ****  * * ***  *  *** *** * **** **  

consensus_5992#0      ----AGCAGCACGTACAAGCGATCCCTCTGC-AGCGCCTTAATACACGTGAAGAACACCA 232
consensus_5992#1      TGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAAT 122
                          ****** *  *       ***    ** *    **  ** ****   *  * *   

consensus_5992#0      AAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCT 292
consensus_5992#1      ATAAAGGCA-CGATTACCTTTCAAGTTGGAAATGATCGAT----GGTTTGGCGTAAAAGG 177
                      *    **** *  ** *        ** **** *  ***       *  *  * * *   

consensus_5992#0      CAATATAGTTGAGATGAAA---CACC-TAATACA--CGAAAAAAAGTGTGCCGATATGCC 346
consensus_5992#1      CACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTA 237
                      ** **  * **** ** **   **** ** ** *  **  ** *    *  *  ****  

consensus_5992#0      TAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGA 406
consensus_5992#1      CAAT-ACTTATAGTAGGATTTTCCT--GTCAGCACGCGC---CGACAGTGTTCGCTTGTA 291
                       **  * **   ** * ** * * *  **   *     *   * **  **  ** *** *

consensus_5992#0      TTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATAT 466
consensus_5992#1      GTTTTGAGCATATGA-ATGTGCGGTTGCAA-------TACTAGAAGCCTAGTAAAAATGG 343
                       **   ** ** * * *    * **  * *       ****    *  *   *   **  

consensus_5992#0      TAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGA 526
consensus_5992#1      GAAGGATCTAAAA--AGTGGTACATTATACCAGCGATCATTATCACG-AAATAAATT-GA 399
                       **  **   ***  ****** * * *    * ****  * *  * * * **  *** **

consensus_5992#0      TGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTC 586
consensus_5992#1      CACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACC 459
                          * * *  * ** * * **        *    *  *  * *   *    *      *

consensus_5992#0      GATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTAC 646
consensus_5992#1      TATTCCGACCAGAAATCCCGCCAA----GGCACCACT----TGCATGGGCAATATAGCCC 511
                       ***  *   * ** *  *  *      *  *          *** *  *** ** *  *

consensus_5992#0      AAGCACT--AGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAG 704
consensus_5992#1      ACTTTATCGAAGGGATCGTTAATACTGTTGTATAT-TGAAACACCTAAATCGGTCACGCA 570
                      *     *  *  **  ** *       **** *** *  **  *  *  ** * ****  

consensus_5992#0      GTGTGGCGGTTCCTGACGTATATGTTTGTAC-ATATCGGATTCATGCATCTGATTATGAA 763
consensus_5992#1      AAA----GACTAAAAACACAAACAGCTGGACGATAGCGTACTC---CATTTGCTTCCAAT 623
                             *  *    **  * *    ** ** *** ** * **   *** ** **   * 

consensus_5992#0      TCTGCTGGTGCAAATCTTTCTTGGAGTTGCACT-AGAACTGGTACACTGCTGGTGGCGTG 822
consensus_5992#1      TC--ATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCAC- 680
                      **   ** *   * **    *  *** **   * **  *    ** * ** **  **   

consensus_5992#0      TGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTC 882
consensus_5992#1      CAGCAA-GGAATACGCCGCAAATGTTGCCGCC--------------TTTGGTGTT--CTT 723
                        **   **  **    **   ***** ****               *   ****  ** 

consensus_5992#0      CGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTG 942
consensus_5992#1      CACGTGTATTAA-----GGCGCTGCAGAGGGATCGCTTGTACG---TGCTGCTCACAACC 775
                      * ** *****       ** *** * *  ***      * **      * *******   

consensus_5992#0      CGACTATTATCATGAATTGGA 963
consensus_5992#1      GG------------------- 777
                       *                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)